Dalb017047.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- -
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000204.1:1440401-1443806[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 6e-05 0.009 17.4 1.1 2 23 410 431 409 431 0.97 2 16 1.5e-05 0.0022 19.3 1.1 1 23 437 459 437 459 0.98 3 16 0.00025 0.038 15.5 0.1 1 23 465 488 465 488 0.98 4 16 3.8e-05 0.0057 18.1 3.5 1 23 503 525 503 525 0.98 5 16 3.3e-05 0.005 18.2 3.5 1 23 562 584 562 584 0.97 6 16 8.1e-05 0.012 17.0 1.8 1 23 590 612 590 612 0.98 7 16 1.5e-05 0.0022 19.3 0.6 2 23 720 741 719 741 0.96 8 16 5e-06 0.00075 20.8 3.1 1 23 747 769 747 769 0.98 9 16 3.7e-05 0.0055 18.1 0.7 1 23 775 798 775 798 0.98 10 16 0.00054 0.08 14.4 2.7 1 23 809 831 809 831 0.98 11 16 6.4e-06 0.00095 20.5 0.7 1 23 844 866 844 866 0.98 12 16 0.018 2.7 9.6 2.0 1 23 872 894 872 894 0.97 13 16 3.2e-05 0.0047 18.3 0.3 2 23 900 922 899 922 0.96 14 16 1.1 1.6e+02 4.0 0.2 1 23 930 953 930 953 0.89 15 16 0.19 29 6.4 1.9 2 23 962 984 962 984 0.93 16 16 0.00067 0.1 14.1 2.0 2 23 990 1011 989 1011 0.97
Sequence Information
- Coding Sequence
- ATGTCTGTAAAATTGGATGATTCTGCTTGCAGGGTGTGTTTAAGTTCCTCAGGCTGCATAACCATTTTCGATGATTGCGGCAAAGATGACCAATTTCGTTATTGCACTTCACTCGAGGCTTCCAAAGACGATGGACTCCCATCAAAACTCTGTAAGAAGTGCAACGATCATCTTAAAGTTGCCTACGATTTTCGTTTCCAAGCTATCTATGCTGAAAAATATTTTCGAAAAACTATTTTCTTGCCTTCGTTTAAGAAAGAAGAAGATGGAACCAACAGAAATACCGACGAGGTCGAAAGAAACACAAGTAATTTATGTTCCGATGAATTGGACGAAAATATGGCAGAAATTGATATGTTGTTGGCGATCCATACGGAACGTGTTGAAGATGCCAGTAATGATAATGACAACGATGAAAATGATAATGAGATGATGGACAATACTGAGTTCTTTGACAATGACAGTGTAGATGTCGATGAGAAACAGGTTGAAATTATCGGGATGGAAACATTCGAAAAGGAAAAGCGTGAACAAAAAGAGCAAAAAGTGAAGTTAGAGATAGCCAATGTCCCGCTGCCCTTAGTGTCTATTACAGAACGTAGCACGAGGTATGAAATATCATCGGTAGCTTTGTCAAGCATACCGTTAGAGTCTCCACAATCAGCAACTAGCAATAACACCAATATTGTACAACAAAGTCAAGGAAGCATAGACAATATTCAGCAATACCCGGATTCGAGCCGTTTTACCCATCACACTCAATCTATTCAAGATATAACCGTGGAGAACACGAATGGCAGATCTGAGCATCTAGAAATCCATCCTGTCTTGAAGAATGATCCGTCTGGGTATGATTTTAATGTTGCATCAACGGTAGCTGTTGGCTACGACTCGTATTCCACATCATCACATATTCAGTTCCAACAAATGCCGGTTCAGATGGAATATGAGCAACAACATAATGCATTGCCACTACAAGAATCTTTGCATCCGAACTCTGAAAACTATGATTTCCCATATCAGGAACAATTTTCAACGTATGGTACACAAACTAATGAAATAGTTTCTCAACAACAACAGGAAAATAATCAGCCATTCCAACAACAAGATCAAGTCTGTGAAGAATTGCCCAACAACAACAATTTTAAAACTGAATATCTAGAAGGTACAGTTGTTCCGAAAGCAAAAAAAGCAAAAACTACGACATCAAGTCGCAAGGATAGAATCGAATGTAATATTTGCGGTAGTGTCTTCACGCATTTGAACTCACTGAAGACACATCTACTGAAGCATTCGGGCGAAAAACCTTTCAAGTGTGAATTCTGCGATAAGGCTTTTGCCCGGAAAACAGTGCTAAATATACACCGGCGATTACACACCGGTGAGAAGCCATACAAGTGTTCCCTCTGCCCAAGCGCCTATGTTACTAAGGAAGCTCTAGCCCGCCATCTACAAAAAGATCACGTTGAAGAAGTGGGAGCAAATTTCCGCCGCGATAAAGTATCATATATTTGTTCCATATGCAACAAGTCCCGATGTTCTAAATACTCCCTCGCTTCTCATATGAAGACACATTTCAATGAAACAAAGGTTCGTCGCAAAATAGTTCGCAAAAGAAAGGAAAAGCAACCAGGTGGTGTTGGTTCTACTGATTTAGTGGCACAACACAATGTGTTGTTAAAATATTCTTGCAAAATTTGTCATAAAAGCTTTCCTAACAAATGGGAACTGTGTACTCATGCCGAATCGCATAATTTGCACAAGATATTCGAATGTGATGTTTGCCAGAGGACGTTCGAAAAGAAGTTCCAATTGTTATATCACTTACAAACGCACGAAGGTGGTGAAGAATTGGTGAAAGCTAAAGTGAAACCTAGCGCCGAACAAACGAGTTGTAGTAAAGAAATAGAGAAGGAGAAGGCAGATGATCAGCCGCTGTCAGCTGAAAAGAAAACTAAAAAGAAGCTGCGAGTGTCGAAGCGTCGTAAAAAGAAATCAAAAATTGATTATGAGGAAGAACAGGATGAAGATGAAATGAGTGACAAAAGTGAAGTAAAAAATTGTGAAGAAGCTAAGCCCACAAAGATTATTAGCAAAAAAAGAAACACCCGAGCCCAGCGTGAAAATCTTAAAGTACTGCGAACGAGTAGTAAAATTGAGTGTCTTATATGCCAAACTGTGTTTACTCACCCAACATCCCTAAAAACTCACATGCTTGTTCACTCAGGTGAACGTCCATTCAAGTGTGATCACTGTGATAAGTCATTTGCCAGGAAAACCGTCCTTAATATCCATCGAAGACTGCACACCGGTGAGAAGCCCTACAAATGTCCCCTCTGTGATAGTGCTTGTGTCACAAAAGATGCTCTTATGCGGCACATGTCCAAGGACCATGATGATGATCGGGAAGCTGATCGAATAAAATTCACCTGCGGCGTGTGTCATAAATCAATGGGTACCAAGTATTCTCTCCAAACGCATATGAAACTTCACGAACAGAACACAGCAGCAAGTACAGCTGAGCTGAATTTCTCTTGCAATATGTGCACCGAGTCTTTCGATACGAAGTCTGATTATGCAAAGCATATGGAGGTGCATGATTCGCATAGAAATTTCCAATGTGACATCTGCCAGGTGACATTCGAGAAGAAATTTAAACTTCTTTTTCATTTGCAAACACATAAAATTGAGGATCTGCCGTGCAAAAAATGTGGCGAGACTTTTACTATCAGAGAAAATCTCATACAACATGTTAAGATGCAACACATCGATCCTCAGAATATGGACTTCCAATGTCCCACCTGCAATCTAGGGCAATATGATACTCGAGATCTAAAATTGCACGTGTTGAATGTGCACGAAGTGGTCATGGGAGAATTGAATTCCTGCGACATGTGTGGTGAGAGCCATTCTACTGCAGCCGAGTACTACAAACACATGCACGAGAAACATGATTCAATCAGCAAAACGTGCAATGAGTGCAAGAAGTACTTTGACTCGCGGAAGGCATTCGATAAGCATATACTTACGCACTACATGTGA
- Protein Sequence
- MSVKLDDSACRVCLSSSGCITIFDDCGKDDQFRYCTSLEASKDDGLPSKLCKKCNDHLKVAYDFRFQAIYAEKYFRKTIFLPSFKKEEDGTNRNTDEVERNTSNLCSDELDENMAEIDMLLAIHTERVEDASNDNDNDENDNEMMDNTEFFDNDSVDVDEKQVEIIGMETFEKEKREQKEQKVKLEIANVPLPLVSITERSTRYEISSVALSSIPLESPQSATSNNTNIVQQSQGSIDNIQQYPDSSRFTHHTQSIQDITVENTNGRSEHLEIHPVLKNDPSGYDFNVASTVAVGYDSYSTSSHIQFQQMPVQMEYEQQHNALPLQESLHPNSENYDFPYQEQFSTYGTQTNEIVSQQQQENNQPFQQQDQVCEELPNNNNFKTEYLEGTVVPKAKKAKTTTSSRKDRIECNICGSVFTHLNSLKTHLLKHSGEKPFKCEFCDKAFARKTVLNIHRRLHTGEKPYKCSLCPSAYVTKEALARHLQKDHVEEVGANFRRDKVSYICSICNKSRCSKYSLASHMKTHFNETKVRRKIVRKRKEKQPGGVGSTDLVAQHNVLLKYSCKICHKSFPNKWELCTHAESHNLHKIFECDVCQRTFEKKFQLLYHLQTHEGGEELVKAKVKPSAEQTSCSKEIEKEKADDQPLSAEKKTKKKLRVSKRRKKKSKIDYEEEQDEDEMSDKSEVKNCEEAKPTKIISKKRNTRAQRENLKVLRTSSKIECLICQTVFTHPTSLKTHMLVHSGERPFKCDHCDKSFARKTVLNIHRRLHTGEKPYKCPLCDSACVTKDALMRHMSKDHDDDREADRIKFTCGVCHKSMGTKYSLQTHMKLHEQNTAASTAELNFSCNMCTESFDTKSDYAKHMEVHDSHRNFQCDICQVTFEKKFKLLFHLQTHKIEDLPCKKCGETFTIRENLIQHVKMQHIDPQNMDFQCPTCNLGQYDTRDLKLHVLNVHEVVMGELNSCDMCGESHSTAAEYYKHMHEKHDSISKTCNECKKYFDSRKAFDKHILTHYM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00894178;
- 90% Identity
- -
- 80% Identity
- -