Dalb008908.1
Basic Information
- Insect
- Dasysyrphus albostriatus
- Gene Symbol
- -
- Assembly
- GCA_946251825.1
- Location
- CAMIUB010000082.1:1768694-1773126[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0029 0.44 12.1 0.5 1 23 114 137 114 137 0.96 2 13 0.011 1.6 10.3 1.8 3 23 144 164 143 165 0.94 3 13 1.3e-05 0.002 19.5 3.8 1 23 174 197 174 197 0.96 4 13 3e-06 0.00044 21.5 3.3 1 23 339 361 339 361 0.97 5 13 6.2e-08 9.3e-06 26.8 2.9 1 23 367 389 367 389 0.98 6 13 4.9e-05 0.0074 17.7 0.8 1 23 395 418 395 418 0.97 7 13 1.3e-06 0.0002 22.6 1.6 2 23 430 451 430 451 0.96 8 13 0.0007 0.11 14.1 0.3 2 23 457 478 456 478 0.96 9 13 1.9e-06 0.00028 22.2 0.5 1 23 484 506 484 506 0.96 10 13 7.3e-07 0.00011 23.4 0.7 1 23 512 534 512 534 0.98 11 13 4.8e-07 7.1e-05 24.0 0.9 3 23 542 562 540 562 0.96 12 13 1.2e-06 0.00018 22.8 1.2 1 23 568 590 568 590 0.99 13 13 0.0003 0.044 15.2 0.1 1 23 595 618 595 618 0.96
Sequence Information
- Coding Sequence
- ATGTTAGATTTCGATATTGATAAAATGTGCCGAGTGTGCCTCAAAACGAATCTCGAGTTATTTTTGCTGTTCGAAGAGCAAAATGCAGTCGACGGAGTCTTCTTGTCCAACATGATTTCAGAAATGACAATATTTACAATCCGCCGTCATGATGATTTTCCTCATCAAATTTGTTTTGAATGCATGCAAAGAGTCCGCAGTGCATACGATCTCAAAAAACAATTTGAAAGATCTCATCGGAAACTTCTTACGTATCTTGAGTCAATCAACAAAATAACCATTGACACCGCTCCTGACATACAAAACGACAAGAGCGTCCAAACAGAGGATACGACGTTGTTTCCATGTGAAAAATGCGATGCTAAGTTTGTGTCTTATCAACGCCTGAGAGAACACCGTTTGGTCTCACATAAAGGGTCTGACAACAATTGCCGATTCTGTTTAAGGAAATTTAACCGCATCGGAGACCTTAAAAACCACATTGCTGTGCATCACCCGGAAATAAGTCATTTCAATCCCCACGAATGTCTTATCTGCAATAGAAGATTTACTCGAAAAGACCATGTCAACCGGCACATGGCAAAGATTCACAAAATAAAAAGTAGACAAATGTCTGATGATGATGAAGATAACACAATAAATGAAGAAATAAAATCTGATGCTAATCAATTAGAGATGCTGATTGAAACTGAAATGGAGTACGGAAATCTTACCAAAATAGAAAATGTCTCCGAAATGGTCACAAATAAGGATCCTGAGGAATATAATGATGATGGAAGCATTGGTGAAGCAGAAAATCCATTCAGCAGCGATGAGGATGACAAGCCATTAGCTAGTTTAAGAAGTACAATCAATACGAAAAATACAGAGTCGGAAAATATTTCAATAAAGGTAGAACTCGATGAAAATCCCACCGATGTAGATGCATACTGTGTCCCAAAATCAGAAGAAATAGAAACTGATAATAAGGATGTCTCACTAGTCGCGGAGAATACTAAAGAAGTAACAAAAAAATTTCAATGTTCCGTTTGCGCAAAATCATTTGCGCGAAGCAGCCACCTGAAGCGTCATTTTCTTTCGCATGTAGAAGAGAAACCATTCCCGTGTAAAATCTGTGATAAAAGATTTAGCCGTGCTGATCATCTTAAAAGTCACATGAGCAAGCATGATAATACTAGAGCGTTTAAATGTGAAATTTGCAATAGATCTTATAATCGAGCGGATATTCTGAAACGACATATAGAAAGAAAACATAATGTCGACGGACAGTCGGAGCTTAAATCGGAATAttgtgaactttgtaataaatcattcagcacgaaaacgtatctgcaaaaacacatgggcatgcataagaataaatcttggaagtgcaagctatgtccagtaggttttgagtctaaagaagctttgaagcaacacaacaaatcgcatgccaaggagagaccgtttttatgttcggaatgtggtttacgttttgttagaaatgattatttgctgattcatatgcgaaggcacaccggagagaagccatacaaatgtaaatattgtgataagggctttcctcgggcaacggatttaaatgttcaCGTTAAATATcataccggagagaaaacacatttgtgtacaatttgcggcaaaggcttccaacgatcgtacaatttagttgtgcacatgcgtgtgcatactggtgaaagaccatatcagtgttcgcactgtccgaagaattttgcccagggcaatgacttaaaagcacatataaggaggcacactggtgagcggtataagtgcgaaatatgtggAGTTGGATTTGTACAAGGTTATCTCTTGACTCAGCACAAAATCTCTGTTCATGCGGTTGAAGGCGAGGCTAGAAAAGGGCGAGTTGCTAAAGTAAAACCCAATAAACCAATACCAGAGGATATATCCGAAGCAGTTGATGATTCTCAAAATGATATTAAAAGCGAACCAGAACTTTGTAACATTTTCCAGGGATAA
- Protein Sequence
- MLDFDIDKMCRVCLKTNLELFLLFEEQNAVDGVFLSNMISEMTIFTIRRHDDFPHQICFECMQRVRSAYDLKKQFERSHRKLLTYLESINKITIDTAPDIQNDKSVQTEDTTLFPCEKCDAKFVSYQRLREHRLVSHKGSDNNCRFCLRKFNRIGDLKNHIAVHHPEISHFNPHECLICNRRFTRKDHVNRHMAKIHKIKSRQMSDDDEDNTINEEIKSDANQLEMLIETEMEYGNLTKIENVSEMVTNKDPEEYNDDGSIGEAENPFSSDEDDKPLASLRSTINTKNTESENISIKVELDENPTDVDAYCVPKSEEIETDNKDVSLVAENTKEVTKKFQCSVCAKSFARSSHLKRHFLSHVEEKPFPCKICDKRFSRADHLKSHMSKHDNTRAFKCEICNRSYNRADILKRHIERKHNVDGQSELKSEYCELCNKSFSTKTYLQKHMGMHKNKSWKCKLCPVGFESKEALKQHNKSHAKERPFLCSECGLRFVRNDYLLIHMRRHTGEKPYKCKYCDKGFPRATDLNVHVKYHTGEKTHLCTICGKGFQRSYNLVVHMRVHTGERPYQCSHCPKNFAQGNDLKAHIRRHTGERYKCEICGVGFVQGYLLTQHKISVHAVEGEARKGRVAKVKPNKPIPEDISEAVDDSQNDIKSEPELCNIFQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00335289;
- 90% Identity
- -
- 80% Identity
- -