Basic Information

Gene Symbol
-
Assembly
GCA_963555695.1
Location
OY743164.1:9901339-9903669[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.021 24 6.7 2.6 18 43 9 31 5 32 0.93
2 19 0.0049 5.8 8.7 0.5 17 44 36 60 32 60 0.85
3 19 0.002 2.3 10.0 0.1 18 43 68 90 65 91 0.87
4 19 0.00031 0.37 12.6 2.2 17 44 98 122 95 122 0.91
5 19 0.0036 4.3 9.1 1.2 18 44 129 152 127 152 0.94
6 19 0.00015 0.17 13.6 1.5 15 43 157 182 154 183 0.89
7 19 0.0084 9.9 8.0 0.5 18 44 189 212 185 212 0.90
8 19 0.0086 10 7.9 0.7 18 43 220 242 214 243 0.85
9 19 0.29 3.4e+02 3.0 1.5 14 44 250 277 240 277 0.82
10 19 1.8 2.1e+03 0.5 0.8 17 43 301 324 282 325 0.76
11 19 0.36 4.2e+02 2.8 0.0 15 27 358 370 354 384 0.80
12 19 0.11 1.3e+02 4.4 4.1 17 43 403 426 394 427 0.89
13 19 5.3 6.3e+03 -1.0 9.4 6 29 421 444 418 456 0.70
14 19 0.0052 6.1 8.6 2.9 12 43 456 484 446 485 0.79
15 19 0.13 1.6e+02 4.1 0.8 17 44 490 514 486 514 0.85
16 19 4.5 5.4e+03 -0.8 0.5 19 43 552 573 547 574 0.75
17 19 0.00012 0.14 13.8 1.9 5 43 602 639 601 640 0.85
18 19 1.4 1.7e+03 0.8 0.2 15 31 657 675 650 685 0.73
19 19 1.6 1.9e+03 0.6 0.2 5 27 681 699 677 704 0.82

Sequence Information

Coding Sequence
ATGTATCAAAACCAATTAGATTTCGTTTGCGACTACTGCTCAAGAACTTttacaagaaaatataatttacaaaCTCATATAGAAAACTGTCATATCAATTCTTCATGCCACTGTAATATCTGTGGCCAGAATTTCGGCAGTCCGGCGGGATTGATACAACATTTATCCAGAGGCCATAACAACTATGGCCAGCCCTTCCCCGAATGTGAACTGTGCGGACGAATCTTCACCAGAAAacagaacataacatcacatatGATAACTGTACATCTACAAGGACTTGGCTACGAGATACGGTGTCGGTTGTGTAAGAAAACGTTCACAACAGAACGGAATTTGAAAAGGCATATCAATCAGTTGCATAATCCTGATGTTGAGTACCCCACGTGTAACGACTGTCACAAGGTGTTTAGAGGAAAGCACTCGCTCATTGCCCATATACAATCAGTTCATAATGTGAGCGAAAGAGACGCTATCAAATGCCATTTGTGCGAAAAAGTGTACACTAATAACAGGAATTTGAAACGTCATATAGAGATGTTTCACGGCGTAAAGGGGGAGTTTAGATGCGACATCTGCCCAAAAGTATACACTTCGAACCAGAGCTTGAGACGGCATGCAAGAACGAGACACAACACCGACAGCCAGGAACATTTGACATGCAACTTTTGCATGAAAGTTATCATCGGACGAGAAAATTTCGACAGCCATATTCAATTTCACCACCAAGACACCGATATGGATACCAGAAACGAATTTGTGTGCGCGTCGTGCGACAAAAGTTTTGAAGAAGAGTTTTGTTTGCGGCAACACGTAAAATcagaacactcttttaaaaccTTCTACAAGTATTGCAGGAAATCGTTACTCAAACAATACGGGATGGACACGCAACACATATACAATTGTGAATATTGTGACAATTCTTTTTTAACTGTGTACGAGCTTAAAGATCATATGCGCGTCAACCACGACACTGAGTACTCCCTATCAACTTGCAACgtttgttttaataagttttttagTAAAGAAACTAGGTCTGCGCATAGGAATGTGTGTCTACCACCGCCAAACGTGAACACTTGCAGCCACTGCGACAAACTCTTCACTGATATTTCAAGCTTAGAATTTCATACGAGAATTTTTCATCCTCAAGCTCAAATCGCAGATATTTCATCTACAAATATAGATGAAGAAGCTGTGTCATTCAAGTGTGAGCATTGCGATCGCATTTATTACAGCGACAGATCCCTGAAACATCATATGAAGCTAAAACACACTACAGATGAAGAAGTGGAATGCGAATTGTGTGGAAAAATTTGCAGTAACAAGTATTATTTAGCTTCACATATTAAAATCGTCCATAATAACGATTCTTGGTCGCGATGCGAATACTGTGATAAACAGTTTAAATCGAAAAGGAATATTAGAAGGCATATTGAATACACTCATTTGGGCATGCAACGGTACAAATGTATCGAATGCGAGACCTTGTTTAAGGAAAAACGGAGTTTGAGAAAACATGTTCGAACGAAGCATCCTAATTCAGCGGCTTTTCCTCAGTGCCACATCTGTTACAAACGATTTGAGTCAGCGAAATCTTGTAAGATACATCTTAAACTGTTGCATTCTTTCAACATGAACACTTTTCCATGTCACCTCTGTTCCGTGTCCTTCAGTTCCAATGAGGCACTAAGTATCCATCTAGAAACCAAACACTTAGCTGAAGATCAAATCTACAAATGTGAGCAATGCAACTTAGTTTTTAAAGGGCAGGAAAAGTTTGACTCACACAATGATGTCTGCCACGTCAATTTAGTCCCTACGATCAAGCAGAAAGTTCTCCCCAGATGCATTCTATGCATGAAAGATTTTAGCACAAGGAAAACGTTAAAGCGACATATAAAGAAATTCCACGAGGAATTTGATGTGGATGAGTTAGCAAATTTTGGATCGAGACGTAGAACATTTACAGTTGATTGTGAGGAGTGTAACAAGAATTTCAACGATGATTTCTATTTGAGCGTCTATAATAAGCTAAAGCATTTTAGAGACTCGGAAGTATTTAAATGTGGGACTTGTTTCGAGTCCTACAACTCTCTGGAGTTCTCTATACAGAGGTATAAGGTAACTAACGCCGATACTAGCAAAAGCAAAATGATTTTGAGCGAACTTTGTACCACGGAGATGAGTGAAGAAGAGCATGACTTCTCTAACTTCGGAGCTCTGCATGATATGTTGCCGGAGAGTACTACTGGTGATTTACACATAAAATTAGAACCTGTTGATGATTCGGAGATTGAAATCAAGACGGAGCCGCCGTCGCCGTAA
Protein Sequence
MYQNQLDFVCDYCSRTFTRKYNLQTHIENCHINSSCHCNICGQNFGSPAGLIQHLSRGHNNYGQPFPECELCGRIFTRKQNITSHMITVHLQGLGYEIRCRLCKKTFTTERNLKRHINQLHNPDVEYPTCNDCHKVFRGKHSLIAHIQSVHNVSERDAIKCHLCEKVYTNNRNLKRHIEMFHGVKGEFRCDICPKVYTSNQSLRRHARTRHNTDSQEHLTCNFCMKVIIGRENFDSHIQFHHQDTDMDTRNEFVCASCDKSFEEEFCLRQHVKSEHSFKTFYKYCRKSLLKQYGMDTQHIYNCEYCDNSFLTVYELKDHMRVNHDTEYSLSTCNVCFNKFFSKETRSAHRNVCLPPPNVNTCSHCDKLFTDISSLEFHTRIFHPQAQIADISSTNIDEEAVSFKCEHCDRIYYSDRSLKHHMKLKHTTDEEVECELCGKICSNKYYLASHIKIVHNNDSWSRCEYCDKQFKSKRNIRRHIEYTHLGMQRYKCIECETLFKEKRSLRKHVRTKHPNSAAFPQCHICYKRFESAKSCKIHLKLLHSFNMNTFPCHLCSVSFSSNEALSIHLETKHLAEDQIYKCEQCNLVFKGQEKFDSHNDVCHVNLVPTIKQKVLPRCILCMKDFSTRKTLKRHIKKFHEEFDVDELANFGSRRRTFTVDCEECNKNFNDDFYLSVYNKLKHFRDSEVFKCGTCFESYNSLEFSIQRYKVTNADTSKSKMILSELCTTEMSEEEHDFSNFGALHDMLPESTTGDLHIKLEPVDDSEIEIKTEPPSP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00447464;
90% Identity
iTF_00072251;
80% Identity
iTF_00425675;