Dhel029041.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dastarcus helophoroides
Gene Symbol
PAXBP1
Assembly
GCA_028583605.1
Location
CM053336.1:7473730-7477130[-]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 4.9e-30 8.8e-26 92.1 0.7 4 272 497 703 494 705 0.91

Sequence Information

Coding Sequence
atgtCGCTATTTCGTAAACCAAAAAAGCAGATTCAGCGCCGTGTATACACTGAAAACTCGGAGGATGAGGCCGAAGCGATGGACGTTCAAGAGACGCCATTAACggaaaaatcttcgaaaaagaaggataaaaaagagaagaaaccCAAACAGGCTTTGCTAAGCTTCGAAActgaagaagaaggggaagtgTTCCAAGTAAAAAAATCTTCACACAGCAAGAAAGTCATGAAATTGTTCGAAAAAGAGCGACAAAAGAAAAAGGAACCGAAACAAGACAAAGAGGCTACACCAAAGGCCAAGAAAGAAATAGTAACTGACGACTTGGTTCTCGTGGTTAATTCGAGTCATAAGAAACCGCCGACACCCCCGCCGCCTATTTTATGCGGAAGAGATGCTCTTTGTGCCGGTAAGGATGACTTATCGTCTGAAGAAGAGGAAGCACCGACGACAGATGcacataaattttcaaaacctgaCAGTTTTAAAAGGGTGCTTGAATCCGGCGCTATACCGGACGCGGCCATGATCCATGCCGCACGCAAAAGGCGACAAAGAGCTAGAGAAATGGGGGATTTTATACCAGTCGAAGAAGACGCAGAGCCAGAGGATACCGGTAGGTTGCAGAGAGAGGATGAAAATGAAGGTAGCGAAGATGAGAGAATCGATATGGATTTGAATCACGCTTTGAGAGACAGAGAACGAAGGAGAGAGCAGTTTATGGCAGCCCAAGAGTCCGACCATGAGATAGACGAATGGGAGGATCAACAGATACGAAAGGGAGTTACAGGTGCCGCTGTGGCATTAGCTCAGGAACTGAGTTACCAGTCCGAATACAACATGGATACGTTGGAACCGCCTCCCGCGCCTTTGATTGATCCAGGAGTACCACGCACACCCGAAATGATTGCAGAAAAATTACGGGAGCACTACGCCAGCGTTTGTAAATCCCGCGATATGAACATGCGCAGGTTAGAGAAGACCCAAGACGACATAGCTCAATTGTCTCGAGAATTGAGCGAGTTGAAAGTGAAGGCGCCACAAGCTGCTGATAGGTTCCGATTTTATCAAGAATTGCGAGGATATGTAACTGATTTGGTTGAGTGTTTGGATGAAAAAGTCGGGGTGATTATGACGCTGGAGCAGCGAGCTATGGATTTAATGGCGAAGCAGTCCGATTGGTTGATTGAGAGACGTAGGCAGGATGTTAGGGATCAAGCTGAAGAAGCGACGGCGAAACCTGGAACTTTGAAAGGGTTGGATgatgaaattaaagttagaaggGCCGCAGAAAGAGAGGGAAGGCGTACTAGGAGACGGCGGGCTAGGGAATTAGCTGAACAAAATAAGCACGTGGAAGGTATGAGTAGTGACGATGAGATATCGCAGCAagacatattaaattttgaaaaggaaaaagaggaaattgAGGAACTAGTTCAGAAGGTGTTTGATGACGTTATGGAAGATTATTCAACGATCGCTGGCGTCTTAATTAAATTTGAGCAATGGCGGGAAACGGATTTAACTGTTTACAACGAAGCTTACGCCACGCTATGTTTACCTAAGATAGTAAGTCCGTTGATAAGGCTtcatttgatattttggaatCCTCTCAACGAGAGTGTTgatttggaaaagttggaatgGTACCGAACTCTAGCTCTGTATGGATTACACGATGACGAAACTGAAGTTTCACTGGGGCAAGATCCCGATATCAATCTCCTGCCTACAATAGTCGAGAAAGTTATAGTTCCGAAATTAAGCCAGTTGGTCGATCGTTGTTGGGATCCTTTATCAAATTCGCAGACGCTTCGTCTTCTAGGGGTAACGACACGATACATACGAAGGTTTCCAACTCTGGGACCTGCGAGTAAAGCTCTTAACAATCTCTTCAACGCAATTCTGcataaaatgaaaatggctTTAGAACATGAtgtttttattccaattttgcCTAAACTAGCTGAAACGAAATCGCCATTCTTTCAGAGGCAGTTCGCTAGTGGGCTGAAGCTGTTGAAAAACATAAGCAGTTGGCAAGGTGTACTCAACGATAACACTTTAAAAGAGTTAGCTTTAACGTCTCTAATGAACAGATATTTGCTGAGTGCTGTCAAGTTATGCGTTTTGATAGATGCCGTTGTCAAAGTTAATTTAATCACACAGATTTTACCTCGAGTTTGGTTGCAGAATAACACAGCcgaattgaaaatgtttactgtaACTGTTATGAATTTGAGCCAACAACTAGATAAGAATAATCCACTTCATTTGGAATCCATAGATATATTGAATAGTATTTTAAAAACCCTTAGAAGTTAA
Protein Sequence
MSLFRKPKKQIQRRVYTENSEDEAEAMDVQETPLTEKSSKKKDKKEKKPKQALLSFETEEEGEVFQVKKSSHSKKVMKLFEKERQKKKEPKQDKEATPKAKKEIVTDDLVLVVNSSHKKPPTPPPPILCGRDALCAGKDDLSSEEEEAPTTDAHKFSKPDSFKRVLESGAIPDAAMIHAARKRRQRAREMGDFIPVEEDAEPEDTGRLQREDENEGSEDERIDMDLNHALRDRERRREQFMAAQESDHEIDEWEDQQIRKGVTGAAVALAQELSYQSEYNMDTLEPPPAPLIDPGVPRTPEMIAEKLREHYASVCKSRDMNMRRLEKTQDDIAQLSRELSELKVKAPQAADRFRFYQELRGYVTDLVECLDEKVGVIMTLEQRAMDLMAKQSDWLIERRRQDVRDQAEEATAKPGTLKGLDDEIKVRRAAEREGRRTRRRRARELAEQNKHVEGMSSDDEISQQDILNFEKEKEEIEELVQKVFDDVMEDYSTIAGVLIKFEQWRETDLTVYNEAYATLCLPKIVSPLIRLHLIFWNPLNESVDLEKLEWYRTLALYGLHDDETEVSLGQDPDINLLPTIVEKVIVPKLSQLVDRCWDPLSNSQTLRLLGVTTRYIRRFPTLGPASKALNNLFNAILHKMKMALEHDVFIPILPKLAETKSPFFQRQFASGLKLLKNISSWQGVLNDNTLKELALTSLMNRYLLSAVKLCVLIDAVVKVNLITQILPRVWLQNNTAELKMFTVTVMNLSQQLDKNNPLHLESIDILNSILKTLRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-