Basic Information

Insect: Dascillus cervinus
Gene Symbol: -
Assembly: GCA_949768715.1
Location: OX458320.1:26325662-26327596[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.016 1.1e+02 4.2 0.1 26 47 119 140 113 151 0.85

2 13 0.11 7.1e+02 1.5 0.0 19 46 168 195 160 201 0.80

3 13 0.1 6.6e+02 1.6 0.0 21 52 198 229 195 230 0.85

4 13 0.19 1.2e+03 0.8 0.0 26 45 287 306 282 310 0.88

5 13 0.38 2.5e+03 -0.2 0.0 27 52 316 341 314 342 0.81

6 13 0.32 2.1e+03 0.0 0.0 20 33 337 350 334 364 0.75

7 13 0.026 1.7e+02 3.5 0.0 22 45 367 390 362 398 0.84

8 13 0.083 5.5e+02 1.9 0.0 22 44 423 445 420 449 0.89

9 13 0.00087 5.7 8.2 0.1 21 53 450 482 447 483 0.91

10 13 0.0094 62 4.9 0.0 21 47 506 532 503 538 0.84

11 13 0.017 1.1e+02 4.1 0.0 23 47 536 560 531 565 0.85

12 13 0.098 6.5e+02 1.7 0.0 22 44 563 585 560 588 0.89

13 13 0.00012 0.77 11.0 0.2 20 44 589 613 582 620 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.016	1.1e+02	4.2	0.1	26	47	119	140	113	151	0.85
2	13	0.11	7.1e+02	1.5	0.0	19	46	168	195	160	201	0.80
3	13	0.1	6.6e+02	1.6	0.0	21	52	198	229	195	230	0.85
4	13	0.19	1.2e+03	0.8	0.0	26	45	287	306	282	310	0.88
5	13	0.38	2.5e+03	-0.2	0.0	27	52	316	341	314	342	0.81
6	13	0.32	2.1e+03	0.0	0.0	20	33	337	350	334	364	0.75
7	13	0.026	1.7e+02	3.5	0.0	22	45	367	390	362	398	0.84
8	13	0.083	5.5e+02	1.9	0.0	22	44	423	445	420	449	0.89
9	13	0.00087	5.7	8.2	0.1	21	53	450	482	447	483	0.91
10	13	0.0094	62	4.9	0.0	21	47	506	532	503	538	0.84
11	13	0.017	1.1e+02	4.1	0.0	23	47	536	560	531	565	0.85
12	13	0.098	6.5e+02	1.7	0.0	22	44	563	585	560	588	0.89
13	13	0.00012	0.77	11.0	0.2	20	44	589	613	582	620	0.90

Sequence Information

Coding Sequence: ATGGAAATTTGCAATTcgattaaaatcaaaatcaaagagGAAGAACTCGTTCTAAAAGATGAATACGATGCCGAAGACAGATTTACAACCAAGACAGAGTTCGTTCCGGTTTGTACTGATAATCTTGCCGTTAAAACAGAGatcaaagtgGAACCCTCGCAAGATAACGACGGACTTACCTCAACAAGCGAACAATCTATCCCTTCAACTTCTAACCGAGGCATTGAATTCATCGAGTGTGAACGATATTCAGACTCAGGTACGACACTCAAGTGCAGGCCATGTGGAGAATGTTTTCCCTCTAACGAACAGCTTGAAATGCACTTACTAACTCACAACGAATCTGATCGATTTAAATGCAAGCAATGCCATAAAATCTTCAGCCAAACTAGCAAtctaaaaaaacacatgttaattcatacCGGCGAGAAACCCTTCAAATGTAACACATGCGGGAAAGGTTTCATAGAAAGAAGCAACCTCCAAACGCACAAAGTGGTTCATCAAACTGAAAAGCCGTTCAAGTGCCACCTTTGTCCCAAAACATTCTCTCGCAACAACACTCTCAAAGGCCACATTTTAATTCATAAGGGCGAgaaaccctttaaatgtaatCAATGTGATAAAGCTTTTCTGCAAAATAGCCATCTTAAAAATCACTTGTTGGTCCACAAGGGCcagaaacctttcaaatgtAGTCAATGTGTTAAAGCTTTTACTCACAATTCTAGCCTGGTCGCGCACTTATTGGTCCATAAAGACCAAAAGCTTTTTAAGTGTAATTTGTGTGAGAAAGCTTTCAATCGTCGCAACAGTCTCAAAATGCACATTAAGGTTCATACCGGCGATAGGTCCTTCAAGTGCAAGATTTGCGAAAAAACGTTTCTACAAAGTAGCCATCTTAGCACGCACTTGTTGATTCACACGGGCGACAGGCTGTTCAAGTGCGACCAGTGTGATAAAACGTTCACACAAAGTCGGTACGTGAAAGCGCACATGTTGGTTCATAAGAGCGAGAAACCTTTTGAGTGCAATGTTTGTGGCAAAACTTTTGTTAAAAAGTTCTCCCTCACAACGCACATGGCGATTCACAGCGGCGAAAAGTCGTTTAAATGCACCGTTTGTGGCAAGGCGTTTACTCAAAGTGCCACCCTCAATCGGCACGTTGTGACTCATAGCGGCGAAAAGCCTTTTAAATGCGAGCAGTGCGGAAAAGCTTTCACCCGAAATAGTTACTTCAAAACGCACGTATTACTTCATGAGCGCGAAAGGCCGTTCCAATGTCACATGTGCGGCAAAACTTATGCTCAAAACAAAGATCTCAAAACGCACATGTTGGTGCATGCAAGCGAAAAATCCTTCAAGTGCACCGTGTGTGATAAGGCGTACGCGCAAAGTGCGCATCTCAATCGACACATTTTGATTCATAAGGTCGGCAAACCCTTCGTATGCGACCAGTGCGGCAAGGCTTTCGCCCGAAAGAGCTATTTCAAAACGCACTTGTTGCTTCATAAGGGCGAGAAACCTTTTGAATGTCCCTTGTGCGGTAAAGCGTTCTCCATCAACAGCAATCTCAAAGCGCACATATTAATTCACGAGGGGAGAAAACCGTTTAAATGCCACCTGTGCGATAAAATTTATGCGCAAAACAAGGATCTCAAAACGCATTTGTTGATTCATGCCGGCGAGAAACCCTTCAAATGTCAGGTGTGTCAGAAGGCTTTTATGAAACGCGACAATCTTAAAGCGCACATGATGAGTCACAAGAGCGAAAAATGCTTCAAATGCAACCGGTGCGATAAGGTTTTCACGCAAAGCAGATATTTCAGAAGGCACATGTTATTTCATAATGGCGAGAAATCCGTTGCACAAACCAATTAA
Protein Sequence: MEICNSIKIKIKEEELVLKDEYDAEDRFTTKTEFVPVCTDNLAVKTEIKVEPSQDNDGLTSTSEQSIPSTSNRGIEFIECERYSDSGTTLKCRPCGECFPSNEQLEMHLLTHNESDRFKCKQCHKIFSQTSNLKKHMLIHTGEKPFKCNTCGKGFIERSNLQTHKVVHQTEKPFKCHLCPKTFSRNNTLKGHILIHKGEKPFKCNQCDKAFLQNSHLKNHLLVHKGQKPFKCSQCVKAFTHNSSLVAHLLVHKDQKLFKCNLCEKAFNRRNSLKMHIKVHTGDRSFKCKICEKTFLQSSHLSTHLLIHTGDRLFKCDQCDKTFTQSRYVKAHMLVHKSEKPFECNVCGKTFVKKFSLTTHMAIHSGEKSFKCTVCGKAFTQSATLNRHVVTHSGEKPFKCEQCGKAFTRNSYFKTHVLLHERERPFQCHMCGKTYAQNKDLKTHMLVHASEKSFKCTVCDKAYAQSAHLNRHILIHKVGKPFVCDQCGKAFARKSYFKTHLLLHKGEKPFECPLCGKAFSINSNLKAHILIHEGRKPFKCHLCDKIYAQNKDLKTHLLIHAGEKPFKCQVCQKAFMKRDNLKAHMMSHKSEKCFKCNRCDKVFTQSRYFRRHMLFHNGEKSVAQTN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00422853;
90% Identity: iTF_00422853;
80% Identity: iTF_00422853;