Basic Information

Gene Symbol
-
Assembly
GCA_949768715.1
Location
OX458320.1:26783018-26790471[-]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 2.4e-06 0.014 16.5 0.4 17 43 114 137 109 138 0.92
2 16 0.037 2.1e+02 3.1 0.2 17 40 143 163 139 169 0.88
3 16 0.0022 13 7.0 2.2 18 43 207 229 202 230 0.90
4 16 0.089 5e+02 1.9 0.7 17 43 235 262 232 263 0.72
5 16 0.00018 1 10.6 0.5 17 43 298 321 293 322 0.91
6 16 0.074 4.2e+02 2.2 0.6 17 43 327 354 323 355 0.73
7 16 0.00018 1 10.6 0.5 17 43 390 413 385 414 0.91
8 16 0.074 4.2e+02 2.2 0.6 17 43 419 446 415 447 0.73
9 16 0.00018 1 10.6 0.5 17 43 482 505 477 506 0.91
10 16 0.074 4.2e+02 2.2 0.6 17 43 511 538 507 539 0.73
11 16 0.00018 1 10.6 0.5 17 43 574 597 569 598 0.91
12 16 0.074 4.2e+02 2.2 0.6 17 43 603 630 599 631 0.73
13 16 0.00018 1 10.6 0.5 17 43 666 689 661 690 0.91
14 16 7 4e+04 -4.5 0.2 18 27 811 820 811 822 0.82
15 16 0.00082 4.6 8.4 1.3 16 43 957 981 944 982 0.84
16 16 3.5 2e+04 -3.2 0.2 17 25 987 995 984 1008 0.73

Sequence Information

Coding Sequence
ATGAGTAATTGGGATCGAATTAAACTGGAAGTAGAGGAATTCATCATCAAAGATGAGCCTGTTGATACGGTGGACGAATTGGAGGAAGAAGGTCATGAAACTGGTGAAGATGATGAAACAACTAATATTATCTCCGATTCGCATTGTTTTGATGAAAGTCagTTTAAGAAAGTAGAATTTGAGATTTTTGATACAACCAACATAAAAACTGAAGAATTTGATCAAAGTGAACAACAGGAATTTCAAGCAGAGTGCAGTTTATCTTACGGGTGGAAAATCGACCAGCAGTTCAAAGACGAGGACAGCAGTAGCTTACAGGAACAGGGAAGTGGAACTGAATTTCAATGTAAAATATGTCTGAAAGTCTTTACCAGAAAGCAAAATCTCAAACGACACATTAATTCAGTTCACGAAGGGAAGAAAGAATTCAAGTGCACAGTATGTGGAAGAGGTTTTGTTAGAAAGGACAAACTGAAACGACACTTGAAAATTCACGTTGAAAGTGAACAGCAGGAATTTCAAGCAGCATGCAGTTCTTCTTATGGGCAGGAAATCGACCAGCAGCCCAAAGCCGAGGACCGCAGTAACTTACTGGAACAGGGAAGTGGAACTCAATTTCACTGTAAACAATGTCTGAAAGTCTTTGCCCAGAAACAATGTCTCAAGCAACATATTAAGTCAGTTCATGAAGGGAAGAAAGAATTTAAGTGCACAGTATGTGGAAGAGGTTTTGTGAGGAACGACAAACTGAAACGACACATGAAAATTCATGTTGAAAGTGAACATCAGAAATTTCAAGCGGCGTGCCGTTCCTCTCACAGGAAGGAAATCGACCAGCAGCCCAAAACCGAGGACAGCAATAACTTACAGGAACAGGGAAGTGGAAATCAATTTCAATGTAAACAATGTCTGAAAGTCTTTACCAGAAAACAAACTCTCAAACGACACATTAATTCAGTTCACGAAGGGAAGAAAGAATTTAAGTGCACAGTATGTGGAAGAGGTTTTGTGAGGAACGACAAACTGAAACGACACATGAAAATTCATGTTGAAAGTGAACATCAGAAATTTCAAGCGGCGTGCCGTTCCTCTCACAGGAAGGAAATCGACCAGCAGCCCAAAACCGAGGACAGCAATAACTTACAGGAACAGGGAAGTGGAAATCAATTTCAATGTAAACAATGTCTGAAAGTCTTTACCAGAAAACAAACTCTCAAACGACACATTAATTCAGTTCACGAAGGGAAGAAAGAATTTAAGTGCACAGTATGTGGAAGAGGTTTTGTGAGGAACGACAAACTGAAACGACACATGAAAATTCATGTTGAAAGTGAACATCAGAAATTTCAAGCGGCGTGCCGTTCCTCTCACAGGAAGGAAATCGACCAGCAGCCCAAAACCGAGGACAGCAATAACTTACAGGAACAGGGAAGTGGAAATCAATTTCAATGTAAACAATGTCTGAAAGTCTTTACCAGAAAACAAACTCTCAAACGACACATTAATTCAGTTCACGAAGGGAAGAAAGAATTTAAGTGCACAGTATGTGGAAGAGGTTTTGTGAGGAACGACAAACTGAAACGACACATGAAAATTCATGTTGAAAGTGAACATCAGAAATTTCAAGCGGCGTGCCGTTCCTCTCACAGGAAGGAAATCGACCAGCAGCCCAAAACCGAGGACAGCAATAACTTACAGGAACAGGGAAGTGGAAATCAATTTCAATGTAAACAATGTCTGAAAGTCTTTACCAGAAAACAAACTCTCAAACGACACATTAATTCAGTTCACGAAGGGAAGAAAGAATTTAAGTGCACAGTATGTGGAAGAGGTTTTGTGAGGAACGACAAACTGAAACGACACATGAAAATTCATGTTGAAAGTGAACATCAGAAATTTCAAGCGGCGTGCCGTTCCTCTCACAGGAAGGAAATCGACCAGCAGCCCAAAACCGAGGACAGCAATAACTTACAGGAACAGGGAAGTGGAAATCAATTTCAATGTAAACAATGTCTGAAAGTCTTTACCAGAAAACAAACTCTCAAACGACACATTAATTCAGTTCACGAAGGGAAGAAACAATTCAAtgaaatgactaattgggaccgaatTAAACTGGAAGTTGAGGAATTCATCATCAAAGATGAGCCAGTTGATACGTTGGAGAAATTGGAGGAAGAAGAAAGTCATGAAACTAGTGAAGAAGATAAAACAATTAACTCCGATTCTCATTGTTTTGACGAATGTCagGTGGAGGGATTAGAAGTTGAAATTCTTGATACAACCAACATCAAAACTGAAGAAGTTGACGAAAGTGAACAACAGGAATTTCAAGCAGCGTCCAGTTCTTCTTATGAACAGGAAATCGACCAGCAGCCCAAAGATGAGGACAGCAGTAGCTTACAGGAACAGGGAGGTGGTCCTCACTTTCAATGTAAACAATGTCTGAAAGTTTTCGCCAAGGAACCATATCTCAAACGACATACTAAATTAGTTCACGAAGGAAAGACACAATTCAAGTGCACAGAAGATTTAAGATGGATCAAAATTAAACTGGAACCAGAAGAGCTGATCATCAAAGATGAGCCTGATGATACGGTGGAAGAATTGATGGCCCAAGAAAATCATGAATCTGTCGAAGAAGATAAAACACTTAATTTTAGCTCCGATTCTCATTGTTTCGTGAGTAGTCAGaTCAAAATGGAAGGATCGGAAGATGTGATTACTGATGAAATCAAGATCAAAACTGAAGAAATTGATGGAGATGAACATAAGGAACTTCAGGAAGCGTGCAGTTCAACCGGTGATTGGAAGATCGACCAACAACCAAAATATAAAGACAAGAGCAGCTTACGGACAGAGGGAAGTGGAATTCAATGTGAACACTGTACGAAAGCATTTTCCACGAAAGATCATCTCAACCGACATATTAATTCAGTTCACGAAGGGAAGAAACAATTCAAGTGCACAGTATGTGGAAGAGGTTTTATGTGGAAGGATGACCTGAAACATCACGTGAATACTCATAGAGGATCCAAGTGCACAATCAAAGTCGACTCGGTCATAAACAGCCCAGAAGAACTGACCACCATGATCACGTGTTACGTCAACCTATGCAGACTGCCTAAAAGTGTGCTCAAACACTTGGGCAACGACGACCCCAAAGCTCTCAATCCATAA
Protein Sequence
MSNWDRIKLEVEEFIIKDEPVDTVDELEEEGHETGEDDETTNIISDSHCFDESQFKKVEFEIFDTTNIKTEEFDQSEQQEFQAECSLSYGWKIDQQFKDEDSSSLQEQGSGTEFQCKICLKVFTRKQNLKRHINSVHEGKKEFKCTVCGRGFVRKDKLKRHLKIHVESEQQEFQAACSSSYGQEIDQQPKAEDRSNLLEQGSGTQFHCKQCLKVFAQKQCLKQHIKSVHEGKKEFKCTVCGRGFVRNDKLKRHMKIHVESEHQKFQAACRSSHRKEIDQQPKTEDSNNLQEQGSGNQFQCKQCLKVFTRKQTLKRHINSVHEGKKEFKCTVCGRGFVRNDKLKRHMKIHVESEHQKFQAACRSSHRKEIDQQPKTEDSNNLQEQGSGNQFQCKQCLKVFTRKQTLKRHINSVHEGKKEFKCTVCGRGFVRNDKLKRHMKIHVESEHQKFQAACRSSHRKEIDQQPKTEDSNNLQEQGSGNQFQCKQCLKVFTRKQTLKRHINSVHEGKKEFKCTVCGRGFVRNDKLKRHMKIHVESEHQKFQAACRSSHRKEIDQQPKTEDSNNLQEQGSGNQFQCKQCLKVFTRKQTLKRHINSVHEGKKEFKCTVCGRGFVRNDKLKRHMKIHVESEHQKFQAACRSSHRKEIDQQPKTEDSNNLQEQGSGNQFQCKQCLKVFTRKQTLKRHINSVHEGKKQFNEMTNWDRIKLEVEEFIIKDEPVDTLEKLEEEESHETSEEDKTINSDSHCFDECQVEGLEVEILDTTNIKTEEVDESEQQEFQAASSSSYEQEIDQQPKDEDSSSLQEQGGGPHFQCKQCLKVFAKEPYLKRHTKLVHEGKTQFKCTEDLRWIKIKLEPEELIIKDEPDDTVEELMAQENHESVEEDKTLNFSSDSHCFVSSQIKMEGSEDVITDEIKIKTEEIDGDEHKELQEACSSTGDWKIDQQPKYKDKSSLRTEGSGIQCEHCTKAFSTKDHLNRHINSVHEGKKQFKCTVCGRGFMWKDDLKHHVNTHRGSKCTIKVDSVINSPEELTTMITCYVNLCRLPKSVLKHLGNDDPKALNP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00422860;
90% Identity
iTF_00422860;
80% Identity
iTF_00422860;