Dcer015808.2
Basic Information
- Insect
- Dascillus cervinus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949768715.1
- Location
- OX458319.1:24420332-24425277[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.28 5.6e+03 -2.6 1.6 148 169 111 132 75 176 0.51 2 3 7.4e-110 1.5e-105 353.9 27.5 1 300 190 484 190 484 0.93 3 3 0.019 3.8e+02 1.3 7.3 120 171 482 533 481 558 0.86
Sequence Information
- Coding Sequence
- atgGTTGCCGGTCCGAGATTATTATCGAATTTTGTATTGTTGCGAAGAAGCCCATCCCTAAGTGATTGCCTAACGGATTCAGAAAGTTCACCTCATGTCCTTCTGGTCACCAGTATAAACACGTGCAGAAAAAATGTAAGTGCGCCAGGAAGCTGTTATCTTTATGTCGATAAGAGGCTTCCTGGTGacGATGAAGAAGATACTTTTCAAGATGCTCTTGATGAACAAATTTCTGGACAAGTGGAGAATGTCGGTTGCCCAACTAAAGAAGTAACAGATGAATCATTAGCCACATCAAATGCAGACTGTATATCAGACAAAAATTCAGAACATGAAGAAACCGACAACTCCTCAGAATCATTTGAAAAGAATGAAAGTCGTTCAATTGaggaattaaataataatgaaatttgcaCAAACGATTTACTAACAACTAAACAGTTAAATAAAGTTAAAGAAGATGAAGATGATGCTACGACTCCAAAATCACGCAAGGCTTCTACTTTAATACATGAAAATTCTGATgttaacataataaataattttttggacaAATGTGGTGACGATGCAGAAGCACGTCTTTTAGCGAGACGACAAGCTAGAGCAGAAGCAAGAGAAATCCGTATGCGGGAATTAGAACGGCAACAAAAGGAACAAGAAGAGAATGCAGATAGGCAGTTCGATATGCTGTCCGAACCTGCACCTAGAACAGCTAGAGTTCCTGCTGGTAGTCGATATCTATCTAGTAGACGTAGCTCTGAAGATTCCCTTGAAGATGGCGGTAGCTTAAGGGAAATTCGCCATGAACTTAAAGATGTAGAGGAAAAATTTCGCAAGGCCATGATAGCAAATGCTCAACTCGACAATGATAAAAGTGCACAAACATATCAGTTAGAATTGTTAAAGGATAGATTAGAAGAATTAGAAGAAGAACATTCTCAATTGCGGAGAGAACATCGGGATAAATGTAGAGAACATGACCAGTTAAAAAGATTAGGAAATAGACTTAAAGAAGATTTGGCTGTGACTAGAGCAGAATTAGAAGAAAGGGATAAGCTTATTGCTGAAAAGGGTTTAGTTATAGTCGGTGAAAATATACCTCCAGATGAAGGAGGAGATGCTGATGCAAGTGTTAATTGTGTAAATTCCCCTAAAAAAGCGCTAGTCAGCGTTGAAAATGCACAATTATTGGAAACCGTCGGTGAAGGAAGTTTAGATGTTCGATTGGCTAAAGTTGCATCTGAAAAAAGAGAGCTTCAAGACCAAATTAGTCACTTACGCTTAGAATTAGAAGAAGAAAGgagtaaaagaaaaaaatcaaattctatAGGACCAACACTTAACGGCCCCACGTCTGATGTGGACAGCGATTCTGATTTACaaaAAGATGCTCTCAAGCAATTGGCTGACTTTAAGTTTAGAGCTCAAAAAGCTGAACAAGATGTAGCAACACTCCAAGCGACAGTAGCAAGACTTGAAAGCCAAGTTATTAGATACAAATCATCTGCGGAAATGTCTGAAAAGTCAGAAGAGGCATTGAAGCAAGAAAAAAGAAAGTTACAAAGAGAGGCACGAGAAGCTCAAAACAGGGCGGAAGAATTAGAAACTTCAAACAACCACTTACTTAAACGTCTagataagttaaaaaatgctaaatcTGCATTACTTAAAGAGCTTTGA
- Protein Sequence
- MVAGPRLLSNFVLLRRSPSLSDCLTDSESSPHVLLVTSINTCRKNVSAPGSCYLYVDKRLPGDDEEDTFQDALDEQISGQVENVGCPTKEVTDESLATSNADCISDKNSEHEETDNSSESFEKNESRSIEELNNNEICTNDLLTTKQLNKVKEDEDDATTPKSRKASTLIHENSDVNIINNFLDKCGDDAEARLLARRQARAEAREIRMRELERQQKEQEENADRQFDMLSEPAPRTARVPAGSRYLSSRRSSEDSLEDGGSLREIRHELKDVEEKFRKAMIANAQLDNDKSAQTYQLELLKDRLEELEEEHSQLRREHRDKCREHDQLKRLGNRLKEDLAVTRAELEERDKLIAEKGLVIVGENIPPDEGGDADASVNCVNSPKKALVSVENAQLLETVGEGSLDVRLAKVASEKRELQDQISHLRLELEEERSKRKKSNSIGPTLNGPTSDVDSDSDLQKDALKQLADFKFRAQKAEQDVATLQATVARLESQVIRYKSSAEMSEKSEEALKQEKRKLQREAREAQNRAEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -