Dple016696.1
Basic Information
- Insect
- Danaus plexippus
- Gene Symbol
- Rfx2
- Assembly
- GCA_018135715.1
- Location
- CM030915.1:8648574-8657441[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.15 1.7e+03 -0.0 0.0 3 15 114 126 113 130 0.85 2 3 1.2e-31 1.3e-27 96.5 0.7 18 78 154 214 147 215 0.95 3 3 0.98 1.1e+04 -2.6 0.0 24 32 513 521 497 528 0.68
Sequence Information
- Coding Sequence
- ATGATGCTGGAGGGGGGGAGTAGAGGGAGACGAATTGAGGGGGGGGGCGGAGAGTGTGAGAGAGATGCAGCATCACCGGCGGCTGGCGAGGGCGGGAACGGCGTCAACTATCACGTCCAGTATGTGGAGCCGCAGGAGATTTACGCACAGACAGGACATCAGACACATATGGAGACCCTCCGTTCATATCCCGTGTACGGCGTGGCGAGCGTGCCCGCGGACGGCGCGGTGACGGCCGTGACCGCGGTCACAGCGGTCACCGCCTCCGATGACACCTGGCCGGCTGAGTTCACCTTCGAACAACCGGCCTCGCCAGCACCAGCAGCTCGCATGCCGCCGGCCACCGTGCAGTGGCTGCTGGATCACTACGAGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACGATTATTGACTGTGTGTCTCTCCCGCGTTCGACGCTGTACGCCCATTACCTCCGTCACTGTTCCACACATCGCCTGGAGCCGGTGAACGCGGCGTCTTTCGGGAAGCTCATCAGATCGGTGTTCGTGGGTCTGAGGACCCGCCGGCTCGGGACCCGGGGGAACTCCAAGTATCACTACTACGGCATCAGGGCGAAGCATTCCGCGCCTCGAGACCTGCCGCCCACCGTACAGAAGATAGACGAGGAACCGCACTCGTCAGACGAATCCCGTCCCCGTGAGCCGGAGAGTCCCGTGGGTCTGTCTGGTATCGCTCACAGACAGTACTTGGGCTCGGTGAGCGCCCCTGACCCGCCGCCGCTGCAGCTAGACGACCCACCGCCAGACGTGACGCCTGAAGCGATGCAGCAGTTCAGGGATCACCACAGGCAACACGGGGTGGAGTTCCTCGAGGCCGTGGCGTCCCTGGACACGGGAGCTGCGGAGCGCTCTCGTCGGTGGTTCTGGAGGCGCGTGGGCAGGAGCGGGGCCCGCCTGGCCGGTCGCAGGGACGTGTGCACCTGGCTCAGGAGGGCCGAGCTCGAGCTGCACCAGCGAGCCGTGGACCTCCTGCTGCCCGACGTACTCAGGCCCATACCCTCACAACTCACACAGGCCATCCGTAACTTCGCCAAGAGCCTGGAGGGCGCGCTGTCGTCGGGGTCCTCCGGAGCCCCGGCCCCAGCGGCGCGCGCTCAGGCGTTGGCTGCGGGGGCTCTGTCGGCCGCCCTCAGGCGCTACACCTCCCTCAACCACCTGGCGCAGGCCGCGCGGGCCGTCCTCAACAACCACCATCAGATCCAGCAGATGTTGTCGGACCTGAACCGCGTGGACTTCCGCGTGGCCCGCCTCGGTCGCGGGTCGTCGCTGGAGTCGTGGGCGTCGTGGCTGGAGAGCTGCGTCCGCGCCGCGTTGGCCCCGCACGAGCGCCGCGCCGACTACACGCCGCGTGCGCGACGACTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCAGGGAACTCACGCTCAGGTCGGCGGCGTCGTTCGGGTCGTTCCACTTGATCCGCCTGCTGTACGACGAGTACGTCTCCTTCCTCATAGAGCGGCGCGTGGCCGAGCACCGCCAGGAGCCGCCCATAGCTGTGATGCAGCGAGCGATGGATGACGACGATGAGCTGCCGGAGGAGGTTCCCCGCGAAGACGACGACATGAACGGAGAGATGGTGGACGAGGGGCTCGACCACGGGGAGGGAGAGGGGGACGGAGACGGCGAGGGGAACGGAGAGGAGGGGGAGGGGGAGTGGGAGTGGGAGGACGACGACGACGAGCACGAGGAGAGGGAGCAGAAGAGGGCCCGCCTGGACCGAGGCTAA
- Protein Sequence
- MMLEGGSRGRRIEGGGGECERDAASPAAGEGGNGVNYHVQYVEPQEIYAQTGHQTHMETLRSYPVYGVASVPADGAVTAVTAVTAVTASDDTWPAEFTFEQPASPAPAARMPPATVQWLLDHYETXXXXXXXXXXXXXXXXXXXXXXXTIIDCVSLPRSTLYAHYLRHCSTHRLEPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKHSAPRDLPPTVQKIDEEPHSSDESRPREPESPVGLSGIAHRQYLGSVSAPDPPPLQLDDPPPDVTPEAMQQFRDHHRQHGVEFLEAVASLDTGAAERSRRWFWRRVGRSGARLAGRRDVCTWLRRAELELHQRAVDLLLPDVLRPIPSQLTQAIRNFAKSLEGALSSGSSGAPAPAARAQALAAGALSAALRRYTSLNHLAQAARAVLNNHHQIQQMLSDLNRVDFRVARLGRGSSLESWASWLESCVRAALAPHERRADYTPRARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSFLIERRVAEHRQEPPIAVMQRAMDDDDELPEEVPREDDDMNGEMVDEGLDHGEGEGDGDGEGNGEEGEGEWEWEDDDDEHEEREQKRARLDRG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00418709;
- 90% Identity
- -
- 80% Identity
- -