Basic Information

Insect: Danaus chrysippus
Gene Symbol: -
Assembly: GCA_004959915.1
Location: RPCZ01000012.1:2200765-2207252[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 5 3.6e+02 2.1 0.1 3 23 104 124 102 124 0.95

2 18 2.8 2e+02 2.9 0.0 2 23 128 150 127 150 0.89

3 18 0.004 0.29 11.9 0.4 2 23 383 405 382 405 0.96

4 18 0.014 1 10.1 1.4 2 23 444 465 443 465 0.93

5 18 0.79 57 4.7 0.4 1 23 481 504 481 504 0.85

6 18 0.036 2.6 8.9 0.6 1 23 513 536 513 536 0.92

7 18 0.47 34 5.4 1.3 6 23 584 602 578 602 0.95

8 18 0.15 11 7.0 1.4 2 23 621 643 620 643 0.91

9 18 2 1.4e+02 3.4 2.1 1 23 648 671 648 671 0.93

10 18 2.8e-05 0.0021 18.6 1.9 1 23 677 699 677 699 0.97

11 18 7.4e-06 0.00054 20.5 1.2 1 23 706 728 706 728 0.98

12 18 7.3e-05 0.0053 17.3 2.3 1 23 733 755 733 755 0.96

13 18 0.00053 0.039 14.6 3.4 1 23 761 783 761 783 0.98

14 18 1.3e-06 9.1e-05 22.9 1.2 1 23 789 811 789 811 0.98

15 18 0.00061 0.044 14.4 2.3 2 23 818 839 818 839 0.97

16 18 0.00048 0.035 14.8 0.3 2 23 847 869 846 869 0.97

17 18 0.0016 0.11 13.2 1.0 1 23 874 896 874 896 0.98

18 18 0.0028 0.2 12.4 3.3 1 23 902 925 902 925 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	5	3.6e+02	2.1	0.1	3	23	104	124	102	124	0.95
2	18	2.8	2e+02	2.9	0.0	2	23	128	150	127	150	0.89
3	18	0.004	0.29	11.9	0.4	2	23	383	405	382	405	0.96
4	18	0.014	1	10.1	1.4	2	23	444	465	443	465	0.93
5	18	0.79	57	4.7	0.4	1	23	481	504	481	504	0.85
6	18	0.036	2.6	8.9	0.6	1	23	513	536	513	536	0.92
7	18	0.47	34	5.4	1.3	6	23	584	602	578	602	0.95
8	18	0.15	11	7.0	1.4	2	23	621	643	620	643	0.91
9	18	2	1.4e+02	3.4	2.1	1	23	648	671	648	671	0.93
10	18	2.8e-05	0.0021	18.6	1.9	1	23	677	699	677	699	0.97
11	18	7.4e-06	0.00054	20.5	1.2	1	23	706	728	706	728	0.98
12	18	7.3e-05	0.0053	17.3	2.3	1	23	733	755	733	755	0.96
13	18	0.00053	0.039	14.6	3.4	1	23	761	783	761	783	0.98
14	18	1.3e-06	9.1e-05	22.9	1.2	1	23	789	811	789	811	0.98
15	18	0.00061	0.044	14.4	2.3	2	23	818	839	818	839	0.97
16	18	0.00048	0.035	14.8	0.3	2	23	847	869	846	869	0.97
17	18	0.0016	0.11	13.2	1.0	1	23	874	896	874	896	0.98
18	18	0.0028	0.2	12.4	3.3	1	23	902	925	902	925	0.98

Sequence Information

Coding Sequence: ATGTCATCCGATGAATCAGATGATGAATCCCTAGCAATAATAGCAGCCTCAAAGAGAATTAAAGTGGAAGAAGACGAATTAAGTAAAGGAAATGAAGAACGTTCCGCAAAAAAACTTAAAGCCACGAAAAAAACTGATCGTAAACTTACCGTTGCCGCTCCAAATGTTATAGAAAGACCTGAGGATGTATGGTTGTACCTCAAAGACTTGAAACCATCGGGCCCTTACAGCTGCTTACTGTGTGATGATTGGTTTATTAATCGATCTAAAATGATATTGCATTACGCGGTGAATCACAAGAAAGATTTTTGTGGTATATGCAgATACTTCGTACCAAATAGACAGGCCTGGTATGCACATGAGAAATATCATTCACCATGGCCATGTTCTCAATGTGTGGAAACTTTTGCCTCAGAATTAATTTTGAGAGATCATCTTAATAATGCACATAATCTGGTCCACTGTAGATTGTGCCACTTCAGAGTGTCTGCTGATTTCAATTACAATtcacatttatttgaaaagcaCAATGTAACTAATGTATCTTCCAAAAATGAGGATGTTCTATGGAAAATAGAAGGGGATACATTTGAATGTTTACTCTGCTCTAAATCAGAAAATACACTAACGACTTTCTTCGGTCACTATATGGGTATTCATCATTTGACGTTAAAATGTCTCACAACAGTCATAGCCGGCAGGGACACACCATTCACAGTGAAAGGTGCTGATGTTAgtgagaaatttattaatgaacatCTCAAAAGCCACGTTCGATTGGGTTATGTTGATTGGGAAACTAAAGATGATAAAACAAGGACTGAATTCGAAAAAGAAAAGGAATTGGAAATTAGTTTCAACAAAATAGAACAAAGTTCTTCTgtgatagaaataaaagaagaaattATTAGCGATGCAGAAGAATTAGTTGAGAAAGAAAATGATATCAATCAGGAAGATGAGCCCGATAGCAGTTGTTATAAATGGGCCGAGGATTTTGATATTACTTACATGGAAATTATCATAGTACATAAATCATATTACGACTATGTCGACACTTCTCTCAGggatataaattcaaatgtaatGCCACAGAAATCGTATCTGAATTACGACAAAATGAAAGCAGAGATATATATGGACGTTGAATGCgaattttgtaaaacaaactTTGACACAGCTCAGTCTTTTGTTGaacatatgaataaaattcatagTGTTAAATCCGTGCCGTTGTATTCTTGTAGAGTATGTTGTGCGacatttgataattatttagatttatgtACTCATGTTACCGAGGAGCTAGCGGATTTTGAGGATCTCTGGATTTGTCAGTTTTGTGACAAGGAGTTTGATAATCGTGAAGAAACAAGACATCATCTAACCGAGCATTGGACTGCTTTGGACTATGATAATTGTTTCAGTCCACATTTAGGTTTTAAATGCAAATACTGTCCAACATTATTCTGGAATGAACCAGACAGAGAGACACATCAAATTAGAGTGCattatgacaaatataaacatcagTTCTACAAGTGTGAGCAATGTGATATGGAATTTGGTGATAAgGTTTGGTATGTATACCACCACATAGAAAACCATCAAGACTCAAATACAGTAACTAACTATATCCTAAAGTGTAACATCTGTTGTTCGGTGATGGCAACCATTGAGGATATGAGGAATCACTTTGCAAGAAACCATCTCGAGTTCAAGAAAGTGTACTGTAATATAGAGCCTTGCTGTTTTAAACCGTTGAATCACCAGAGGTCactgaaaatacatattaagATGGCGCACAGTATAACCGATTTACCTAAAACTCCGAGTGTGGCTAAAGCTAAGAAGAAGGTGTCATGTAATATGTGCAATCGTAACTTCAATAACGCTCGCGCGTGCAGCACACACATGGCCCAGGTGCATGGACCTGGGAAGTTCAAATGCAAACTGTGCCGCGAAGTGCTGCAGACTGCTGATGAAAGAAAGCTCCACTACCTGTTATGCCACCCTGGCCGTCATCCATTCGAGTGTACCGAGTGCGGGAAATCATTTCAGTACAAATCATCATTGTACATGCACAAACAGGAACACATGCCGAATAAACAGAATTACACTTGTAGTTACTGCAATAAGGTTTTCGCGAAGAAGGATTCGTATCGTGAACACGTCCAGATACACGAAGGTCCCCGCCACGCGTGCTCATACTGTCCGATGAGGTTCGTCCAACGATCAAACATGTTGAGACACGAACGACGTCACACGGGCGAGAGACCTTACAGATGTCCGCATTGCCCTAGAACCTTCGCTGATAAAGGCGCCTGCACTTCACATTCTAGgaCACATTCGAAAGATTCTTCCTACGCGTGTGTGTACTGCGGTCAGACGTTCGTACAGAAATCGAAACTTACATACCATATCAGGAAACACACGGgagaaaATTTGGAGTCGTGTTCCGTTTGTTCGAAGTTATTCACCAGCGCGTGTTCGTTGAGGGAACATATGAAAATACATGTTGAGAAGAAGAAAGTCGTCAAATGTCCTTTATGCGACAAGGGCTATCAAGACGAGCGGTATATGCTTCGTCACCTCCGCACTCTACATTCCCGTTCACAGTTCTCATGTCCGCTCTGCCACAAGCTGCTCTCAAGCGCTGCAGGGCTTCGGCATCACGTCATAACGCACAGCTGTATCAACACTTTCCAGTGTAAATCCTGCACAAAATCGTATGCAGTGAAAAGGACCATGTTGAAACATTTAAGGAAACGGCACGGATTGACAGGCAAGGAGTTAAACATAAAGGATTATTACACGAGATTAGAACCACGCGAGTGTCAATTGGATTTAGATGAGACGACAATGACCAGTATATTCGGACCTCCCAAGAAGAAATCTACGGATATATTGTTCGGTGATTTCGTAACTCTGGCTAAGAAAATCAATGGACCAGAACAAAATAAACCCGATGAAGATAGTAGCGATGAACCGGTTACAATGATTAAACAAGAGGTCGAAAATCAAACCGAAATAGAAATAGAACCGACCGATTTCGTTAGTATTAAGATTGAAAGTGTGGACGTTAGTTTTACAGAGtga
Protein Sequence: MSSDESDDESLAIIAASKRIKVEEDELSKGNEERSAKKLKATKKTDRKLTVAAPNVIERPEDVWLYLKDLKPSGPYSCLLCDDWFINRSKMILHYAVNHKKDFCGICRYFVPNRQAWYAHEKYHSPWPCSQCVETFASELILRDHLNNAHNLVHCRLCHFRVSADFNYNSHLFEKHNVTNVSSKNEDVLWKIEGDTFECLLCSKSENTLTTFFGHYMGIHHLTLKCLTTVIAGRDTPFTVKGADVSEKFINEHLKSHVRLGYVDWETKDDKTRTEFEKEKELEISFNKIEQSSSVIEIKEEIISDAEELVEKENDINQEDEPDSSCYKWAEDFDITYMEIIIVHKSYYDYVDTSLRDINSNVMPQKSYLNYDKMKAEIYMDVECEFCKTNFDTAQSFVEHMNKIHSVKSVPLYSCRVCCATFDNYLDLCTHVTEELADFEDLWICQFCDKEFDNREETRHHLTEHWTALDYDNCFSPHLGFKCKYCPTLFWNEPDRETHQIRVHYDKYKHQFYKCEQCDMEFGDKVWYVYHHIENHQDSNTVTNYILKCNICCSVMATIEDMRNHFARNHLEFKKVYCNIEPCCFKPLNHQRSLKIHIKMAHSITDLPKTPSVAKAKKKVSCNMCNRNFNNARACSTHMAQVHGPGKFKCKLCREVLQTADERKLHYLLCHPGRHPFECTECGKSFQYKSSLYMHKQEHMPNKQNYTCSYCNKVFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCPHCPRTFADKGACTSHSRTHSKDSSYACVYCGQTFVQKSKLTYHIRKHTGENLESCSVCSKLFTSACSLREHMKIHVEKKKVVKCPLCDKGYQDERYMLRHLRTLHSRSQFSCPLCHKLLSSAAGLRHHVITHSCINTFQCKSCTKSYAVKRTMLKHLRKRHGLTGKELNIKDYYTRLEPRECQLDLDETTMTSIFGPPKKKSTDILFGDFVTLAKKINGPEQNKPDEDSSDEPVTMIKQEVENQTEIEIEPTDFVSIKIESVDVSFTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00421607;
90% Identity: iTF_00421607; iTF_00420778; iTF_00419968;
80% Identity: -