Dchr006671.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- Hr39
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000039.1:1144677-1154980[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 2.1e+04 -5.7 9.8 77 189 159 270 71 300 0.56 2 4 1.4e-08 0.0003 20.5 0.1 1 20 377 396 377 402 0.91 3 4 0.00033 6.9 6.2 0.0 75 129 420 472 397 493 0.69 4 4 5.1e-65 1.1e-60 206.5 0.0 203 408 488 694 469 694 0.93
Sequence Information
- Coding Sequence
- ATGTCTAGTGAGGGGGAGACGGTGAAAGTGGAAGGGGGGCATATCTCCGTCACTACTATCAGCATGTCGGGACCGGAAACTAGCAATGGGCAGTTCTCGTATAGCTCGAGTGGAGTTAGAATCAGCGTGTCCTCGGAACCTCAAGATGAGGATTCAACGGACgctgaaatatcaaaaatagatTTCACTCAACATCAGTATGAGGTCAACATGCGGAATAAGAAGAAGCGGTCTTCAAGCGGTCAGTGTGATCAGGCCAAAGAACAGGAGAGGCCAATGTCTTGGGAGGGAGAACTATCAGACTCAGAAATGGTCATTGACACCAGCACTAATAACgATGAGAATAGCAGTTCCTTGGACCTCCAATCGTCAAGGGATTCAATCGACACTCTCCGTAATGTGTCCATTAAGACTGAACCTCTCAAGACAGAGCTGTTCCATACTATGGAGGATCAACGTGTTCTGGACTTGAAGTACACCCTGCCACTACAGTCACATCAGCGAAGTCTCAAATTGAAGTCTGAACCGACGTCCAGTGTGGACAAGCTGCTAGGGCTCCACGGATCCCCCCTGATGGGACGACTCCCTCGCGTTCAATCTAGCGCCAGTACTGACTCCGCGGTACACTCGATGTATACACACAGTGTATACAGCAGTCCGTCAGCCAGCCCCCGCCCCTCGCGTCACTACACCCCCTCCCTGTCTCGCAACAACAGCGACGCGTCACACTCATCGTGCTACTCATATAGCTCAGAATTTTCCCCCACTCATTCTCCAGTAcaaAGTCGTCACCCTCACGTGGTGTACCGCGAGCCGGCCGTGTTCCCCGCCTCGCCCGCTCACGATGAGGACGCGGAGGGAGCTGAGGATAGGCTGCAGCACCACCAGGGGATCAGCCGGCAACAACTCATTAacagTCCATGTCCCATTTGCGGCGACAAAATCAGTGGCTTCCACTACGGGATATTTTCTTGCGAGTCTTGTAAGGGCTTCTTCAAACGGACTGTTCAGAATCGTAAGAACTACATGTGTTTGAGAGGCGGCAACTGTCCGGTTACTGTCGCTACTAGGAAGAAATGCCCCGCGTGTAGATTCGATAAATGTCTGGGATGCGGAATGAAACTCgaagCTATAAGAGAGGACCGTACCCGCGGCGGTCGTTCTACTTATCAGTGTTCGTACACTCTCTCCGGCGCGGCGTCCACCGGGTCCTTACTATCAGCGCACGCGCCCGCCACGCTGAGACACGCATCTAGTCTCACATgtgtgAACGGTCCAGGCTCTTACAACAGAGGCGAATCAAGCAACAGTCGACTCACACCTGACATACCTCCATTATTGCAGGAAATAATGGACGTGGAACATCTATGGCAGTACAATGAGTCGGAATTGAGTCGTATGAGTAAGAATTCGAGTAGTCCTTCAGCGAATCCATTGCTAGCGGCCAGCGGAATCACAGCACAGAACTCTAGCGCAGACTTCCTGGCTGACTTGTGCAATATAGCTGACCACAGATTATACAAGATAGTAAAGTGGTGCAAGAGTCTGCcgctctttaaaaatatatccATCGACGACCAGATATGTCTGTTAATAAACAGTTGGTGCGAGTTACTTGTGCTGTCTTGTTGCTACAGAGGAGTCAGTACTCCCGGGGAGGTGCGGGTGGGAGGAGGAAGGGGAATAACGCTACAACAGAGCGCCAAGTACGGTCTAACTCCGTGTATTGAACGTATGTTGAGTTTCACTGATCACTTGAGGAGGCTGCGTGTTGATCGTTACGAGTACGTCGCGCTCAAGGTCATCGTACTACTCACTTCagATGCTCCAGAGCTTCATGAAGCGGAGAAGGTGAGAGCTTCCCAGGAGAAGGCGCTGGCAGCCTTACAGGCGTACACCGCCACACACTCACCCGACACACCTGCCAAGTTTGGTGAACTACTGCTGAGAATACCTGAACTACAGAGAACTTGCCAgTTTTTCATGCAAGTCGGAAAAGAAATGCTCAATCCAGCGAATAAAAGCAAAGATGGAGAGGGACCGAGCTTCAACCTACTCATGGAACTGCTTCGAGGAGATCATTGA
- Protein Sequence
- MSSEGETVKVEGGHISVTTISMSGPETSNGQFSYSSSGVRISVSSEPQDEDSTDAEISKIDFTQHQYEVNMRNKKKRSSSGQCDQAKEQERPMSWEGELSDSEMVIDTSTNNDENSSSLDLQSSRDSIDTLRNVSIKTEPLKTELFHTMEDQRVLDLKYTLPLQSHQRSLKLKSEPTSSVDKLLGLHGSPLMGRLPRVQSSASTDSAVHSMYTHSVYSSPSASPRPSRHYTPSLSRNNSDASHSSCYSYSSEFSPTHSPVQSRHPHVVYREPAVFPASPAHDEDAEGAEDRLQHHQGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYMCLRGGNCPVTVATRKKCPACRFDKCLGCGMKLEAIREDRTRGGRSTYQCSYTLSGAASTGSLLSAHAPATLRHASSLTCVNGPGSYNRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELSRMSKNSSSPSANPLLAASGITAQNSSADFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLQQSAKYGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELHEAEKVRASQEKALAALQAYTATHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGEGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00985246;
- 90% Identity
- iTF_00419062;
- 80% Identity
- iTF_00419062;