Dchr010481.1
Basic Information
- Insect
- Danaus chrysippus
- Gene Symbol
- lrrfip2_1
- Assembly
- GCA_004959915.1
- Location
- RPCZ01000201.1:126346-135581[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.7e-66 7.7e-62 209.5 12.6 1 222 101 315 101 318 0.92 2 3 5.5e-07 0.011 15.2 1.8 222 297 422 489 418 491 0.70 3 3 1 2.1e+04 -9.6 18.2 1 48 488 534 488 566 0.69
Sequence Information
- Coding Sequence
- ATGATATCAGCTATGTCTGAGTCAGGACTGGCGACTCCCGAAAATTCTGATGATGAGAGCGGTGATGCTTTCACAGATGGTGATTTTGGTGATTCGGAAGACgaggttatttttaataagacaaGTGATACAAATTCACAGGTCAATGAGACTGTGAATACTAGTGTCGTAGAAAAGAATTGCAGTGATAATATGAAAGATATTAGTGATAATAGTGCTGCTATAGATGGTGATGATGAACTGGTGAAGGATTTGAGCAGCGGATCCATCGTCGGCATACTAGGAGACCAGCAGACTCATGCCGAGCAACGCCTGGCGGCTCGGCGAGCGGCTCGAGCGGAGGCTCGGGAGATACGGATGAGGGAGTTGGAGAGACAACAGAGAGAACAGGAGGACCATGCGGATAAGGCGTACGACATGTACACCGAGACGGTCGGCCGCCGGGCTGGCAGCCGGCTGGCGGCGCTCAGTCCAAGCGTGCACTCGCCACGACGAAGCTCCGAAGACTCCGAGGACGTGCTCAGCATCAAGGACCTTAGACACGAGATGAAAGAGGTGGAGGAAAAGTTTCGTAAGGCGATGATCCTGAACGCTCAGCTCGACAACGACAAGGCGGCGCTCGGCTACCAGCTGGAGCTGCTCAAGGACAGGATCGAGGAGCTGCACGAGGAGTACGCGCAGCTGCAgCGCGAGCACCGCGAAAAGTGTTCCCTCCACGAGCGTCTGAAGAGGGAGCACGCGACCCTGGAGCGGGAGGTGGCGGAGGCGAGGGACGCGGTGCGGGCGCGGGACGGGGCGGCGGCCGCGGCCGGACGGGTGTTCGTGGACGCCAGCGCCGCGCCCGGCGTGCCGTCCGGCGGGGCGTGCGGCGCGGTGCCCTCGCTGGCACTCGTCACCATCGAGAACCAACAGCTGCTGGACGACGCTGGAGAGGGCACGCTCGGTACgacaacacacacacacacacacatacataagAAAGGATATCACGATATATAGATTAGTCAGtgttggcctagtggttaaagccCCGCCTCTAGTTTCCGATtgcgcgggttcaatcctggcccaggcaagtaccaatgtgatttttccgagtcatacgtactttctaagagtatttagacaccactgattaatgcattcccaatgagggttgatgtcaggcaggcggattcgtaaaaaacaatcagctaaaactattcacaacaaaaGACAGACAGGCTAAagtgggaaattgccaggtagaagaagatcaCGATATACGTGCGACTGTCCCGCCTGGCGGAGTCCCGATCGTGCCTGGAGGGCGAGGTGCGGCGCCTCAAGCTGCAGCTGTGTGACGAGCGAGCGGCCAGGCAGAACGGGGTGGCGCAGAGCCACGACAGAGACGTGGATAACGAATTGGAGTCTCTCCGCAAGGCGTTATCGGAGGCGAAGGGTCGCGCAGCGAGGGCGGAGGCCGAGGCGGCGCTGCAGGCGGCCGGCGTGGCGCGGCTGGAGGCGCAGCTGGCGAGGATGAGGGCCCGGCAGGACGACCAGGACGAGCGGGAGGAGGCGCTCAAACAGGAGCGGCGGAGGCTGCAGAGAGAGgCCAGAGAGGCGCTGAACCGGGTCGAGGAATTGGAAACGGAGAACAGTCACCTCACCAAGAGACTCGACAAACTGAAGAATGCTAAGTCAGCTCTACTAAAGGATCTGTGA
- Protein Sequence
- MISAMSESGLATPENSDDESGDAFTDGDFGDSEDEVIFNKTSDTNSQVNETVNTSVVEKNCSDNMKDISDNSAAIDGDDELVKDLSSGSIVGILGDQQTHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYTETVGRRAGSRLAALSPSVHSPRRSSEDSEDVLSIKDLRHEMKEVEEKFRKAMILNAQLDNDKAALGYQLELLKDRIEELHEEYAQLQREHREKCSLHERLKREHATLEREVAEARDAVRARDGAAAAAGRVFVDASAAPGVPSGGACGAVPSLALVTIENQQLLDDAGEGTLGTTTHTHTHIHKKGYHDI*ISQCWPSG*SPASSFRLRGFNPGPGKYQCDFSESYVLSKSI*TPLINAFPMRVDVRQADS*KTIS*NYSQQKTDRLKWEIAR*KKITIYVRLSRLAESRSCLEGEVRRLKLQLCDERAARQNGVAQSHDRDVDNELESLRKALSEAKGRAARAEAEAALQAAGVARLEAQLARMRARQDDQDEREEALKQERRRLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -