Dvit005045.1
Basic Information
- Insect
- Daktulosphaira vitifoliae
- Gene Symbol
- lrrfip2
- Assembly
- None
- Location
- scaffold221:28238-50229[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.3 7.5e+03 -3.6 0.4 37 75 103 142 88 157 0.53 2 3 2.5e-96 6.3e-92 308.5 24.4 1 300 207 505 207 505 0.87 3 3 0.037 9.3e+02 -0.6 3.8 121 172 504 555 503 572 0.82
Sequence Information
- Coding Sequence
- ATGAAAAATAGCATGAACGACGATAACCAATGCAATACTGACGTAATAGCTTCGTGCGATCTCGTGTCAAGTGGACATATTACACATATATACATTAATCAAAACATGAACGGCGATTTCGAATCTTTAGACACTAGATTACTTGTCAATATGCCTATACCGCCTTTTATGAATAAAGGATCACAACATACTAAAGGGATATCTAATACTAATGATACTAGTGTTAATATTTTAAACGATTCAAGTGCATTTGATTATACAGAGGATATAAATCAGACATCACAAATAATAATTGATAATGAACGAATGTATTCTTGTCAAATACGTGTAAATGATGAAAGTAGCTCTATTAATACAAATAATGATCAAAATTTGATACTCAAAGAGCTTTCTTATTCATTTTCTGATAAATATGATGAGGACTCTGACAGTAGTAAATACTCACTAGGTGACATTGATGAATTATCAGACAACACTTTATCAATTAGTCAGCAACCAAGTATAATGAGAGCTCGTAGTGACTGCTCCAATTGTGATTATTATTCTGAAGATGATTATGTTTTGACTGATACAGAAGCTGAAGGAATTGTTAATTTTCTGGATAAAAGTAATGATGAAGCTGAAGCACGATTGGCTGCTAGACGACAAGCACGCGTGGAAGCAAGAGAAATTCGCATGCGTGAAATTGAAAGGCAACAAAAGGAAGCTGAAGAAAATGCAGATAAGGCTTTTGATATGTCTACTGCAGATGGAGTAAATATTAATCGAATATCCCGTGTCACGGCTGGTATAACAAGCAGTCCTCGAATTCCTGGTTCCATTACAAATAGTTACCAATCTAGTCGACGTAATTCAATTGACTCTCTTGATGAGTCCACCCCTAACTTTCGTGATTACAGAATGGAATTAAAAGACCTTGAAGAAAAATTCCGAAAAGCTATGGTACAAAATGCTCAACTTGATAATGAAAAAGCAGCTGCTACCTACATGGTAGAATTATATAAAGATAAGTATACAGATATTGAAGAAGAATTAATGCATATAAAGAGAGAATACAAAGAAAGTTGTAGAGATAATGAAAAATTAAAACGTCTACTATCTGCTCAAAGAATTGAAGCAAATGCTCTTCAACAGGAACTGCAAGAACGTGATACACTTATTGAAGAAAAAGGCTTAGTGATAGTTAGTACTGAGCAAGATGAGTGGAGTGAAAGTGAACAATGTAATAAAGTTACAATTAGACGAGCTTTAGTATCTATGGAAAATGCTCAATTATTACAAGGTGCTGGAGAAGGTTGTCTAGATGTGCGACTTAAAAAATTTGCTGATGAGCGTGCTGGCTTTTTAGAAGAGATCAGTAGACTTAAATTAGAATTACAAGAAGCAAAACACTTTAGTGATATTCAATGTAATGGTACAGATTCAGATGATTTGGAAGATACTCAAAAAGAAACAAATAAAGTACTTGGAGATTATAAGTTTAAATGGCAAAAAGCTGAACAAGATATTTCAACATTGCAAGCAAATGTTGCCAGACTAGATAGTCAAGTTATTAGATATAAAACTGCTGCTGAAGCAGCTGAAAAAGCTGAAGATGAGCTAAAATTAGAAAAACGAAAAATGCAACGTGAGCTTCGTGAAGCTCAAGCTAAAGTTGAAGAACTTGAAACATCTAATATGCATTTGTTAAAACGTTTTGATAAGTTGAAAAATGCTAAATCCAGTTTATTAAAAGATTTGTAA
- Protein Sequence
- MKNSMNDDNQCNTDVIASCDLVSSGHITHIYINQNMNGDFESLDTRLLVNMPIPPFMNKGSQHTKGISNTNDTSVNILNDSSAFDYTEDINQTSQIIIDNERMYSCQIRVNDESSSINTNNDQNLILKELSYSFSDKYDEDSDSSKYSLGDIDELSDNTLSISQQPSIMRARSDCSNCDYYSEDDYVLTDTEAEGIVNFLDKSNDEAEARLAARRQARVEAREIRMREIERQQKEAEENADKAFDMSTADGVNINRISRVTAGITSSPRIPGSITNSYQSSRRNSIDSLDESTPNFRDYRMELKDLEEKFRKAMVQNAQLDNEKAAATYMVELYKDKYTDIEEELMHIKREYKESCRDNEKLKRLLSAQRIEANALQQELQERDTLIEEKGLVIVSTEQDEWSESEQCNKVTIRRALVSMENAQLLQGAGEGCLDVRLKKFADERAGFLEEISRLKLELQEAKHFSDIQCNGTDSDDLEDTQKETNKVLGDYKFKWQKAEQDISTLQANVARLDSQVIRYKTAAEAAEKAEDELKLEKRKMQRELREAQAKVEELETSNMHLLKRFDKLKNAKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -