Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: stc
Assembly: GCA_001594065.1
Location: NW:251075-256133[-]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.5 8.9e+03 -3.7 1.1 15 19 481 485 480 485 0.82

2 14 0.22 1.3e+03 -1.0 1.2 4 10 514 520 513 523 0.81

3 14 2.3e-06 0.014 14.8 11.1 3 18 530 545 529 546 0.93

4 14 1.3e-09 7.8e-06 25.2 15.4 1 18 582 599 582 600 0.98

5 14 1.7e-07 0.001 18.5 13.4 3 19 640 656 638 656 0.92

6 14 0.99 5.8e+03 -3.1 0.7 5 10 685 690 685 690 0.94

7 14 1.5e-05 0.089 12.3 11.0 4 18 703 717 696 718 0.86

8 14 2 1.2e+04 -4.6 1.6 5 10 747 752 747 752 0.90

9 14 0.0083 49 3.5 11.3 1 11 758 768 758 780 0.88

10 14 1.4e-08 8.3e-05 21.9 12.5 1 18 785 802 785 803 0.97

11 14 0.39 2.3e+03 -1.8 0.7 5 10 831 836 830 836 0.94

12 14 2 1.2e+04 -4.7 7.3 10 19 850 860 848 860 0.72

13 14 8e-07 0.0047 16.3 11.8 1 16 896 911 896 922 0.84

14 14 2.5e-06 0.015 14.7 12.0 1 19 928 947 928 947 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.5	8.9e+03	-3.7	1.1	15	19	481	485	480	485	0.82
2	14	0.22	1.3e+03	-1.0	1.2	4	10	514	520	513	523	0.81
3	14	2.3e-06	0.014	14.8	11.1	3	18	530	545	529	546	0.93
4	14	1.3e-09	7.8e-06	25.2	15.4	1	18	582	599	582	600	0.98
5	14	1.7e-07	0.001	18.5	13.4	3	19	640	656	638	656	0.92
6	14	0.99	5.8e+03	-3.1	0.7	5	10	685	690	685	690	0.94
7	14	1.5e-05	0.089	12.3	11.0	4	18	703	717	696	718	0.86
8	14	2	1.2e+04	-4.6	1.6	5	10	747	752	747	752	0.90
9	14	0.0083	49	3.5	11.3	1	11	758	768	758	780	0.88
10	14	1.4e-08	8.3e-05	21.9	12.5	1	18	785	802	785	803	0.97
11	14	0.39	2.3e+03	-1.8	0.7	5	10	831	836	830	836	0.94
12	14	2	1.2e+04	-4.7	7.3	10	19	850	860	848	860	0.72
13	14	8e-07	0.0047	16.3	11.8	1	16	896	911	896	922	0.84
14	14	2.5e-06	0.015	14.7	12.0	1	19	928	947	928	947	0.97

Sequence Information

Coding Sequence: ATGGCCACCTGGAACGGTTCATATCCGGAAGATCCAGGTTGCTTAGTGTACGCCGACCAGAATGCAACAGACACTACCGCAGGAAACTGGTCGTACTTCGTTGATAACAACACATACCTACAACGCAATGTATCTCAAATATCCGCGGGAAGTTACTATCCTAGAGCTAGGGGTGGTCACCAGGTCTATGAACAGAACGAACCAACAACGTCTTCTCACCAGGATGGCAGCCAGTATCCGTCGAATATGGTGTCTTTACAGAACAATGCCTATCAGAAACGTGTATTACCAGACACCTTGTCCGCAGATAATGCAGGAGCGTCGAACAGCTTCATCTCGACGTCGCACAACGCATCCTCCCGTGGCGGTTACAGAAGACCCAGGGGTAATCGGGTGGCCGGCAAGCATCCGCCACTGTCATCGTCGACGGGCGACGTCGTTCAGTCCACTGTAGTGAAGAACTCCAATTTACATCTTATAGCCAATGAATTTGTGCCGAATAATCAGGGCAGATTCCGAAAAGATAACAAATTCAAGAAGTACGATAACCCGAGTGGTTTCAATACCTTCGGGCAAGAATTCAGATCAAAGTCATCCCTGTCAGATAATAAAAGCGAAAGACATTACGACAACAGAAAAGATGCAAATTATAGACAGAGGAAGTCACAGGATATGCAGGCTCCATCGAGATCTAGCTACAGAGATATTCCTAGGACTTACAACACaagaaactataataaatttcagaatGGCAAGTATTACAATAGAAAGTATCAGTCAAATGTACCTTCTACTGAACAGAATGCTGCTAGAGAAGCTCGAACAACTATGACTAATGCCATTGATTCAGCTATGTCTAATAGTCAGGAAAATAAGTCTTTTGGTGAGGATATTCAAGAGGATGACTCGTTTTCGAGTACAAAAATCAATAGAAGCAAGGAAGAGGTTTTGACACAAGAAGATAACAATTCAGAAAACATGTCTTCAAGAAGTCAAGAAACATCACGAAGTGGTAGAGTTAAGCGATTTGCTAGTACATCCAATTATCATAGATATATTTCAAACGATATGCAATTTGAATCTGGTACCAGCCGTAAAACAACAGCAACGACAGCAAAGTATACACAAAGAAGAAACAATGAGATAAGTTATAAGGAGAAGAAACTAACAAATTGGAGAGATAAGTCAGAAAGTAATGAGACAGTGCATACATTTCaaggaaaatatttcaagaaaaaaaatgatattgATGATGACTCGAGCCAGAGGGAAAGATTAACTGAGCAGTTGAACAAGGGAATATTGGAATGCCTGGTTTGTTATGAGCATATTAAGCAAAGCGATTACGTTTGGTCATGTAGCAATTGTTATCACGTAttgcatttaaaatgtatcaaaaaatgGGCCAAGTCCTCTCAGAGCGagAATAATAGTTGGAAGTGTCCGGCTTGTCGAGATGTTAGTTTCCTCGTGCCTGAGGATTACTTCTGCTTCTGTGGAAAGATGAAGATGCCAGAGTGGAATCGCAGAGACATAGCACATTCATGTGGCGAGATTTGTGGCAGACATCTGTCCAAGAATAATTGTACGCACAAATGTATTTTGCTCTGTCATCCTGGCTCTTGTCCGCAATGTATAACAATGACAACCAAGTATTGCGGATGCGGGAAAACGTCGAAGATGCTTCTATGTAGCGCTCAACAACGGTTAATATGTGATTCAGTATGCGGCAAGGATTTGTCGTGTGGCAAACACACCTGTCAGAGAATATGTCATCAGGGAGAATGCGGGCCTTGCGACAAAACTATACaacaaaTATGTTTCTGTAGTAAGAAAACTCAGGAGATACCCTGTCGAGTCAATGTCGCAGATACATTTTCCTGTGATAAtacttgtaataaaatgttagaCTGCAAGAAACATTATTGTCAGAAAGTCTGTCATCCAGGGTCCTGCAAACCCTGTTCTTTGACGCCTGAAAATGTTACTGTGTGTTGTTGTGGTCAAACACCATTaatagagaagagagagagttgtACGGATCCTGTGCCGACCTGCGATAAAATCTGTTCAAAGCGCTTGAAATGCGGCCAGCCTAGTAATCCGCACATCTGCAAGGCATTATGTCATGTAGGGGAATGTCCGGAATGTGACTTGAACACTGATGTCAAGTGTCGTTGCGGTAACATGGATCGCGAAATTGCTTGCAAAGACTTAATGAGCAAGGCCGATGATGCACGCTGCGAGAAACGCTGCAAGAAGAAAAGAACCTGTGGTAAACACAATTGCAATCAGTTGTGCTGCATCGACATCGAACACATCTGTCCGTTACCATGTTCAAAGACTTTGAGCTGTGGTCGGCATAAGTGCCAGGAAAGATGTCACATAGGAAGATGTTCGCCTTGCTTGGAGAGCAGCTTTGAAGAATTGTATTGTGAATGCGGCGCCGAGGTGATTTATCCGCCGGTACCATGTGGTACGAGAAGACCCACTTGCAATCGACCATGTTCGCGCGAACACCTCTGCAACCACGAAGTATTGCACAACTGCCACAGCGAGCCCACATGTCCACCTTGCAGCGTCTTGACTCAGAGATGGTGCCATGGTAGACATGAACTCAGGAAGGCAGTGCCGTGCCATGTGAAAGAGATCTCGTGTGGTCTGCCGTGTAATAAACCATTGACGTGTGGACGGCATAAATGTATCACAATGTGCCATGCCGGACCCTGCGAGAGAGCCGGACAACAGTGCACTCAACCTTGCACTACAACGAGAGAACTCTGTGGCCATATTTGTGCTGCTCCATGCCACGAAGGCAGGTGTCCAGATATGCCTTGCAAAGAGACGGTCAAGGTTACATGCCAGTGTGGGCATAGAACTATGAGTCGTGCCTGTGCAGATAATGCACGAGAATATCAGAGGATAGCAAGCAACATTTTGGCTAGTAAGATGGCGGATATGCAACTTGGTCACTCTGTTGATTTGGAAGAAGTGTTTGGACAAGGTGCAAAAAAGCAGAATCAGTTAAAGACTTTGGAATGCAACGACGAGTGTAAGACAATAGAAAGAAACAGAAGACTCGCATTGGGATTGCAGATTGTCAATCCGGATTTAAGTGGCAAACTGATGCCTAGATATAGCGATTACATGAAACAGTGGGCTAAAAAAGATCCGTACTTCTGCCAAATGATTCATGACAAATTGACAGAGTTAGTACAGCTAGCGAAGACATCCAAACAGAAATCCCGGAGTTATTCGTTTGAAATTATGAACAGAGAAAAGCGTCATTTTGTGCACGAGACGTGCCAGCATTTTGGCTGTGAGAGTCAAGCGTATGATGAAGAGCCAAAGAGAAATGTTGTTGCTACTGCTGTAAAAGACAAGTGTTGGTTACCAAGCTACAGTTTATTAGAAATGatacaaagagagaaaggacAAAGAAAGGTTCCAGGCCCGGTACTTAATACTTCGAAGGGAAATAACTCTACAAAGACTGTTTTTTCGTTACCTGTAAAACAGAATCAGCAATTGCTGCCATCGTCAACTCCTAAAACTGTTGACAaagaaatagattattttgACTATCGAGATTAA
Protein Sequence: MATWNGSYPEDPGCLVYADQNATDTTAGNWSYFVDNNTYLQRNVSQISAGSYYPRARGGHQVYEQNEPTTSSHQDGSQYPSNMVSLQNNAYQKRVLPDTLSADNAGASNSFISTSHNASSRGGYRRPRGNRVAGKHPPLSSSTGDVVQSTVVKNSNLHLIANEFVPNNQGRFRKDNKFKKYDNPSGFNTFGQEFRSKSSLSDNKSERHYDNRKDANYRQRKSQDMQAPSRSSYRDIPRTYNTRNYNKFQNGKYYNRKYQSNVPSTEQNAAREARTTMTNAIDSAMSNSQENKSFGEDIQEDDSFSSTKINRSKEEVLTQEDNNSENMSSRSQETSRSGRVKRFASTSNYHRYISNDMQFESGTSRKTTATTAKYTQRRNNEISYKEKKLTNWRDKSESNETVHTFQGKYFKKKNDIDDDSSQRERLTEQLNKGILECLVCYEHIKQSDYVWSCSNCYHVLHLKCIKKWAKSSQSENNSWKCPACRDVSFLVPEDYFCFCGKMKMPEWNRRDIAHSCGEICGRHLSKNNCTHKCILLCHPGSCPQCITMTTKYCGCGKTSKMLLCSAQQRLICDSVCGKDLSCGKHTCQRICHQGECGPCDKTIQQICFCSKKTQEIPCRVNVADTFSCDNTCNKMLDCKKHYCQKVCHPGSCKPCSLTPENVTVCCCGQTPLIEKRESCTDPVPTCDKICSKRLKCGQPSNPHICKALCHVGECPECDLNTDVKCRCGNMDREIACKDLMSKADDARCEKRCKKKRTCGKHNCNQLCCIDIEHICPLPCSKTLSCGRHKCQERCHIGRCSPCLESSFEELYCECGAEVIYPPVPCGTRRPTCNRPCSREHLCNHEVLHNCHSEPTCPPCSVLTQRWCHGRHELRKAVPCHVKEISCGLPCNKPLTCGRHKCITMCHAGPCERAGQQCTQPCTTTRELCGHICAAPCHEGRCPDMPCKETVKVTCQCGHRTMSRACADNAREYQRIASNILASKMADMQLGHSVDLEEVFGQGAKKQNQLKTLECNDECKTIERNRRLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPYFCQMIHDKLTELVQLAKTSKQKSRSYSFEIMNREKRHFVHETCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEMIQREKGQRKVPGPVLNTSKGNNSTKTVFSLPVKQNQQLLPSSTPKTVDKEIDYFDYRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00385965;
90% Identity: -
80% Identity: -