Ccot003129.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- zfh1
- Assembly
- GCA_001594065.1
- Location
- NW:186160-190641[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.071 1.7e+02 1.9 0.2 21 50 219 248 212 250 0.88 2 6 3.8e-06 0.0088 15.6 0.4 21 50 289 318 270 320 0.94 3 6 0.008 19 4.9 0.6 21 48 360 387 357 393 0.89 4 6 3.8e-05 0.088 12.4 0.6 20 50 429 459 421 461 0.89 5 6 0.035 83 2.8 0.0 26 48 506 528 500 531 0.90 6 6 0.0022 5.2 6.7 0.1 20 48 570 598 565 604 0.89
Sequence Information
- Coding Sequence
- ATGGTACTTCTGGTCAAGTGCCATTCATTGAAGAAGAACAACAGCGAAcgaatatatcaatatatcagGCATATTATTAATCGCAAATTAAAGAAGCATAATACTATGGCTGGTggacattttaaaattgtggcgattttaaagaaaagaggCAGTTCGATAATACTAGAATATTCCTATGTGCCATACCAGTGGGAAAAGGATGGAATCCTTTATTGGccgaaaagaaatattttgtccTTGCGAAAAGATCCAACGAGCACGTATGAATCTGACTGGGAACAGTATaaatgtaaagtaaaaaagGATAATATCGTGGGAATTGACGAAGCCGAACTGTGGGAGGAAGAGTACACTGAACCAAAACTGTCACGCATATGCAAAACGTGCGGTAAAGGATTTACGACGAAATGGAATTTGCGACAACATGAGTACACTCATACAGGcgaaaaactttataaatgcAAACTTTGTGAAGATAAATTTAGGCTAAAACAACATCTAGGAAAGCACGTGATTGCAAAGCATTGCAATGATGAACGTTACAAGTCTAATAAACACCTGTATGCTGGCGGCGTATCATACAAATGCAaaacgtgtaataaagagtttaaataTGAATCGGCATTGTATAGACATGAAAGAACTCATAATGGCGAAAAACCCTTCGAATGCGAATATTGTGGGATAAGATTTTCGCAAAAAACTACCCTAGAACAACACGTAGTGGCACATCATTTCAATGAGGAGCGTTACAAGTCTAATAAACACATATATACTGGTGGCGTATCATTCAAATGCAgaacgtgtaataaagagtttaaatatatatcggcATTGCGTAGACatgaaataattcataatgGCGAAAAACCCTTCGAATGCGAATATTGTGGGATAAGAATTTCGCAAAAAAATAACCTACGACGACACATAGTGAGAAAGCATTTCAATGAGGAGCGTTACAAGTCTAATGAACACCTAAATGCACCTGATGAAGTATCATACAAATGCAaaacgtgtaataaagagtttaataataattcggcATTGTGTAGACatgaaataattcataatgGCGAAAAACCCTTCGAATGCGGACATTGTGGGATAAGATTTTCGCAAAAATGTAACCTACAACGACACGTGGTGGCAAAGCATTGCAATGAGAAGCGTCACAAGTCTAATAAACACCTACATACTGGTGGCGTATCATACAAATGcggaacgtgtaataaagaatttaaaaataaatcggcATTGAGTAGACGTGAAAGAATTCATAATGGCGAAAAACCCTTCGAATGCGAACATTGTAGGATAAGATTTTCGCAAAAAGGTAACCTACGACGACACATAGTGACAAAGCATTTCAATGAGGAGCGTtacaagtttaataataaacacctATATACTGATGGCGTATCATACAAATGCGGAAcgtgtaataaaaagtttaaaaataaatcggcATTGCTTGATCATGAAAGAATTCATAATGGCGAAATACTTTATCATTGTgagatttgtaaaaaaatgtttagCACAAAAGAAAACCTAAGAGCGCACGTGGTGGCAAAGCATAACAATGACGAACGTTACAAGATTAATAAGGACCTATACACTGGAGGTGTATCATACAAATGCGGTACATGTAATAAAGAGTGTAGAAGTAAATGGCAGTTGAGTGTTCATGAAACGAGTCATAAAGACGAACAACGTTATTATTGTGAAATTTGTGGAGAAATGTTCAGATATATTTCATCTCTAAAACGgcataaaaagttaattcacTCGAATAACTTTAATGTTATTACTAGGGCTCGCTATTATACGTTTAAACGAAAACAcgtataa
- Protein Sequence
- MVLLVKCHSLKKNNSERIYQYIRHIINRKLKKHNTMAGGHFKIVAILKKRGSSIILEYSYVPYQWEKDGILYWPKRNILSLRKDPTSTYESDWEQYKCKVKKDNIVGIDEAELWEEEYTEPKLSRICKTCGKGFTTKWNLRQHEYTHTGEKLYKCKLCEDKFRLKQHLGKHVIAKHCNDERYKSNKHLYAGGVSYKCKTCNKEFKYESALYRHERTHNGEKPFECEYCGIRFSQKTTLEQHVVAHHFNEERYKSNKHIYTGGVSFKCRTCNKEFKYISALRRHEIIHNGEKPFECEYCGIRISQKNNLRRHIVRKHFNEERYKSNEHLNAPDEVSYKCKTCNKEFNNNSALCRHEIIHNGEKPFECGHCGIRFSQKCNLQRHVVAKHCNEKRHKSNKHLHTGGVSYKCGTCNKEFKNKSALSRRERIHNGEKPFECEHCRIRFSQKGNLRRHIVTKHFNEERYKFNNKHLYTDGVSYKCGTCNKKFKNKSALLDHERIHNGEILYHCEICKKMFSTKENLRAHVVAKHNNDERYKINKDLYTGGVSYKCGTCNKECRSKWQLSVHETSHKDEQRYYCEICGEMFRYISSLKRHKKLIHSNNFNVITRARYYTFKRKHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00417758;
- 90% Identity
- iTF_00417758;
- 80% Identity
- iTF_00417758;