Ccot001032.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- -
- Assembly
- GCA_001594065.1
- Location
- NW:354180-359325[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.55 34 4.6 0.5 6 21 272 287 269 288 0.89 2 12 0.06 3.7 7.6 0.3 1 21 293 313 293 316 0.82 3 12 6.8e-05 0.0042 16.9 0.5 3 23 330 351 329 351 0.96 4 12 0.0063 0.39 10.7 1.3 3 23 363 383 363 383 0.98 5 12 2.2e-07 1.3e-05 24.8 1.6 2 23 424 445 423 445 0.97 6 12 0.027 1.7 8.7 0.1 1 12 450 461 450 473 0.74 7 12 0.18 11 6.2 1.8 2 23 539 560 539 560 0.97 8 12 2.7e-06 0.00016 21.3 3.0 1 23 567 589 567 589 0.97 9 12 0.0076 0.47 10.4 3.1 1 21 624 644 624 645 0.94 10 12 0.00012 0.0077 16.1 2.4 1 23 670 692 670 692 0.98 11 12 0.14 8.4 6.5 0.0 1 23 756 779 756 779 0.97 12 12 6e-07 3.7e-05 23.3 4.7 1 23 784 807 784 807 0.98
Sequence Information
- Coding Sequence
- ATGATGAATGCGAATCTGTACCCAGCGATGGCCGCAGATAGACTCATGTGGGACAAGGTCTGTCGGCTGTGCTCGGAGGAGAGAAACGAGATGCTGCCAATCTTTGGCGACGAGGGTCTGCAACGTAGAGTGGTGCAGAAGCTACGCGCCTGTCTGCCTGTACTTGTGTACCAAACCGATCCGTTGCCGAAGCAGATTTGTCAGTTTTGCGCGGCCAGACTAGACGACGTGTACCAGTTCAGAGAGTTTTGCATCAACATCTACAGGAGTATGCACGCTGTGTTGCTGAAGTGCGAACAGATGGAGTCTGCTCAGATATATCTCGAAGCGATGAAGAACTCGTCGGATCCGTGCCagGTACAACTTTGTAAGGAAAAGTCTAGAGCTCCACCACCGTTGGTTCCTTTATCAATCGTCATGCCCTTCGATGACTCAGCAACACCGATTAATCAAGTTAATCAGGATCATTTTCAAAATGCTTGCATGGAAACTTTGTCTGAATTACCCTGTGAGGTAGAAATTAAGGAGGTGAATACGGATCCAATTTTTAGTGCCGAAACTGCCATTTGCAAACCGCTGAATAAGAAGCGTAAATTGTCAGAGATGTTTGATATGGATATGCAAGCAAGAGCGGAGTCTGTTTTTATACCTGATATGGAAGGAGCAAAAGCTCCTAAGTCAAACTGCCAAGccaagaaagaagagaaacgAACCAGTATTCTGGAACAAGTACTGACTGGTAATTTGACGATGAATAATCATCAGAATCTACAATCTGAAGCAAAGTTAACTTCCGAATGGTGGTGTGCACCCTGTAACAGTTATTACAAAACAAAGGACAGTTTAATGACACATATGCAGCACTGCCCGCGTGTATATACTTGTAAAAAGTGTTCCACGTCCTTTGAATCTGTCGAAATCTTAGCCAAACACGAAGCTAATGATCATTTGAAGGTCAAGCTGGATTTCACAGAAAACTTGAATGACTGTGATCAGTGCGATCGGCAATTCGTAAGATGGGAAATGCTGAAGCAGCACAGACTGCGCGATCATTTAGCTGAATTGACTGATGGAAGCAATACATGGTGTTCATTATGCAATAGATTCTTCCCTACTGTagaatcttataaaaaacaCACTCAGTTACATCAAACAAACTCGGCGATATCTCAGAAATTACCATCTTCAGAATTGATGGTGGCAAAAATACCAGAACGAATTAGAGAAATTAAACGGGACGAACAATActatgaaaatgtaaaatctcTCACGTGTCCCACTTGCGGGAAGATTTGCACCCAGCAGAGCGCATTATCAAATCACATGCGCACTCATGAACCGAAGAAGCACAAATGCGACATTTGCGGTCGGTCATTCGGACTTTTAATACGCTTAGCTGGACATAGAATAGCCGAGCATAATGAACAGCCAATGATGTCACCAGTCTTGTCAGCAATCGAGCAAGAGGAGGCTTTAAATGCTGAGAGGGAAGCGAGAGAAGCTAAATCTCGCAGTGGCAAGAAATCTTATTCCGAGGTAATGGAGAAGAACGATGTCCCAATAGATGACGAGTCTATAACAAAACGTATTTCTGGTGGAAATAAAAACGTAGCAAGATGCGGCATTTGCTCACAATGGTTCAGCGATCACACGACAATGTTAACGCATCTTCAGACACACTCTGAATCTCATAAGAGTTACACGTGTcacatatgtaaaaaatcgTTCAAGGAACAATCACAGCTATTGAAGCACGAGGCTAGTCATAAACGTCAAACGCTCGATAATGCCTCACTGTACACATCCGCTGTTTATAACAAATCATTCATGGATAAAGCGCAGCAAAAGACACACACGGTGGCTAAAACCTATCACTGtccaaaatgtaataaaatctttttcaaagagGTATCGCTGCTCACCCATTTATGCAGGGATACAGCAcaacttgaaaaaaaagtcaCAAAGTCTCGGCTAAAGACGTCGCTTCATGATGGCAATAAGACACACAAATGCTCCAAATGTGACGCAACTTTCGCAAGCTCGCAGTCACGAAACGCTCACATGAAAATGCACGCCGAGTACATGCGCGGCAGTACAGCGCAGGCACACGAAGTTAAAGTCGAAGCAGACGATGAACCGATGCCAAAATTGCGTCCGGAAACCCTAGAATATATATCTCCTATTGAGCCAAAGGTTGAAATTAACGAGCAGGGTACACCTCCGCCTCTTAAACGGACTCTCATTAAAACAGCTAATAACGgatatcgaTGTGGTGTATGTCAATCACCGTTCGTGTTAAGGGAATTAGCTGTGGCGCATTTGAGATCTGCACATCCTGTAATGCCATATCAGTGCCCTTATTGCAAAAAGCGATTCACGACGCAGTATACATTTGCTCATCATATCAAGACAGAGCATCCCGACGAACCCGAGAAATGA
- Protein Sequence
- MMNANLYPAMAADRLMWDKVCRLCSEERNEMLPIFGDEGLQRRVVQKLRACLPVLVYQTDPLPKQICQFCAARLDDVYQFREFCINIYRSMHAVLLKCEQMESAQIYLEAMKNSSDPCQVQLCKEKSRAPPPLVPLSIVMPFDDSATPINQVNQDHFQNACMETLSELPCEVEIKEVNTDPIFSAETAICKPLNKKRKLSEMFDMDMQARAESVFIPDMEGAKAPKSNCQAKKEEKRTSILEQVLTGNLTMNNHQNLQSEAKLTSEWWCAPCNSYYKTKDSLMTHMQHCPRVYTCKKCSTSFESVEILAKHEANDHLKVKLDFTENLNDCDQCDRQFVRWEMLKQHRLRDHLAELTDGSNTWCSLCNRFFPTVESYKKHTQLHQTNSAISQKLPSSELMVAKIPERIREIKRDEQYYENVKSLTCPTCGKICTQQSALSNHMRTHEPKKHKCDICGRSFGLLIRLAGHRIAEHNEQPMMSPVLSAIEQEEALNAEREAREAKSRSGKKSYSEVMEKNDVPIDDESITKRISGGNKNVARCGICSQWFSDHTTMLTHLQTHSESHKSYTCHICKKSFKEQSQLLKHEASHKRQTLDNASLYTSAVYNKSFMDKAQQKTHTVAKTYHCPKCNKIFFKEVSLLTHLCRDTAQLEKKVTKSRLKTSLHDGNKTHKCSKCDATFASSQSRNAHMKMHAEYMRGSTAQAHEVKVEADDEPMPKLRPETLEYISPIEPKVEINEQGTPPPLKRTLIKTANNGYRCGVCQSPFVLRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFAHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126946;
- 90% Identity
- iTF_00182158; iTF_00182806; iTF_00181503; iTF_01476456; iTF_01261993; iTF_00014921; iTF_00015573; iTF_00016859; iTF_00016220; iTF_01477821; iTF_01477105;
- 80% Identity
- -