Acha005315.1
Basic Information
- Insect
- Acromyrmex charruanus
- Gene Symbol
- -
- Assembly
- GCA_017607545.1
- Location
- JAANIC010004024.1:6108670-6112194[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.052 2.7 7.7 0.5 6 23 263 280 260 280 0.92 2 12 0.6 31 4.3 0.2 1 21 285 305 285 308 0.82 3 12 6.2e-05 0.0032 16.9 0.5 3 23 322 343 321 343 0.96 4 12 0.0014 0.071 12.7 0.9 2 23 354 375 353 375 0.96 5 12 1.5e-07 7.9e-06 25.1 1.8 2 23 414 435 413 435 0.97 6 12 0.033 1.7 8.3 0.2 1 11 440 450 440 463 0.80 7 12 0.16 8.2 6.2 1.8 2 23 532 553 532 553 0.97 8 12 1.2e-06 6.3e-05 22.3 1.3 1 23 560 582 560 582 0.97 9 12 0.012 0.6 9.7 1.9 1 21 617 637 617 638 0.95 10 12 0.00011 0.0058 16.1 2.4 1 23 665 687 665 687 0.98 11 12 0.12 6.4 6.5 0.0 1 23 750 773 750 773 0.97 12 12 5.4e-07 2.8e-05 23.4 4.7 1 23 778 801 778 801 0.98
Sequence Information
- Coding Sequence
- ATGGCCGCAGACAGGGTCATGTGGGACAAGGTCTGTCGGCTATGCTCGGAGGAGAGGAACGAGATGCTGCCAATCTTTGGCGACGAGGGTCTGCAACGTAGAGTGGTGCAGAAGCTGCGTGCTTGCCTGCCTGTACTTGTGTACAAGAGCGATCCATTGCCGAAGCAGATCTGTCAGTTTTGCGCAGCTAGACTGGACGATGTGTATCAGTTCAGAGagttttgcataaatatctATAGGAGTATGCATGCTATGTTGCTCAAGTGCGAACAGATGGAGTCTGCTCAGATATTTCTCGACGCGATGATGAACTCGTCAGATCCGTGTCAGGTTCAACTCTGCAAGGAAAAGTCTAGAGCTCCACCGCCGTTGGTTCCTTTATCAATCGTCATGCCCTTTGATGACCCAACGACGCCGATTAATCAAGTCAATCAGGATCATTTTCAGAATACCTGCATGGAAACTTTATCTGAATTACCCTGCGAAGTAGAGATCAAGGAGATGAATACAGATCCAATTTTCAATGCCGAAACCGCCACTTGTGAACCGCTAAATAAGAAGCGTAAATTGTCAGACATGTTTGATATGGATATACAGACAAAAGTGGAATCTGTTCTTATAGCTGATATAGAAGGAGCAAAAGCTCCTAAATCGAACTGTCAAAccaagaaagaagaaaaacgaaCGAGTATTCTGGAACAAGTGTTGACTGGTAATTTGACAATGAATAATCACCAGAAACTACAACCTGGAACGAAGTTAACTTCTGAATGGTGGTGTGCACCCTGCAATAGTTATTACAAAACAAAGGACAGTTTAATGACGCATATGCAATTACACTGCCCCCGTGTATATACTTGTAGAAAGTGCTCCGCATCCTTCGAATCTGTCGAAATCTTAGCCAAACACGAAGCTAATAACCATTTGAAAGTCAAGATGGATTTCACGGAAAACTTAAACGACTGTGATCAATGTGACCGGCAGTTCGTAAGATGGGAAATGCTGAAGCAACACAGACTGCGCGATCATTTAGCTGAATTGACTGATGGAAGCAATACACGGTGTTCATTATGCAATAGattcttccCTACAGTAGAATCTTATCAAAAACATGTTCAGTTACATCAAACAAACTCGGCGATATCTCAAAAGTTACCATCTTCAGAATTTATGATTACAAAGATACCAGAACGAATTAGAGAAATTAAACGAGATGAACAGTGCTGTGAAAGATCTCTCAAGTGTCCCACTTGCGGGAAGATTTGTACCCAGCAGAGCGCATTATCGAATCACATGCGCACTCATGAACCGAAGAAGCATAAATGCGACATTTGCGGCCGGTCATTCGGACTTTTCATACGCTTAGCTGGGCATAGAATAGCCGAGCATAATGAACAACCAATGATGTCACCAGTCTTATCAGCAGTCGAGCAAGAGGAAGCCTTAAATGCTGAGAGGGAAGCAAGGGAAGCGAGGGAAGCTAAATCTCGCAGTATCAAGAAATCTTATTCCGAGATAATGGAGAAGAACGATATCCCAGTAGATAACGAATCTGTAACGAAACGTATTTCTGGTGGAAATAAAAACGTGGCGAGATGCGGCATTTGTTCACAATGGTTCAGCGATCACACAACAATGTTAACGCATCTTCAGACACACTCAGAGTCTCATAAGAGTTACACGTGtaacatatgtaaaaaatcatttaaggAACAATCGCAATTATTGAAGCATGAGGCTAGTCATAAACGTCAAACGCTCGATAATGCCTCACTGTACACATCCACTGTTTACAACAAATCATTAGTGGATAAGGCGCAGCAAAAAACACACACAGTGGCTAAAACCTATCACTGTGCAAagtgtaataaaatctttttcaaagAAGTATCGCTGCTCGCTCATATATGCAGGGATACAGCACAACTTGAAAAGAAAGTCGCTGAAAAGAAGTCTCGGCTAAAAACGTCGCTTCATGTTGGCAATAAGACACACAAGTGCTCCAAATGTGACGCGACTTTCGCAAGCTCGCAGTCACGAAACGCTCACATGAAAATGCACGCCGAGTACATGCGCGGCAGTACAGTGCAGACACACGAAATTAAAGTCGAAGCAGACGACGAACCGATGCCAAAATTGCGTCCGGAAACCCTGGAATATATATCTCCTATCGAGCCAAAGGTTGAAATTAACGAGCAGGGTACACCTCCGCCTCTTAAACGGACTCTCATTAAAACTAATAACGGGTATCGATGCGGTGTATGCCAATCACCGTTCGTGTTGAGGGAATTAGCCGTGGCGCATTTGAGATCTGCACATCCCGTGATGCCATATCAGTGCCCGTATTGCAAGAAACGCTTCACGACGCAGTACACATTTGCCCATCATATTAAGACAGAGCATCCCGATGAACCCGAGAAA
- Protein Sequence
- MAADRVMWDKVCRLCSEERNEMLPIFGDEGLQRRVVQKLRACLPVLVYKSDPLPKQICQFCAARLDDVYQFREFCINIYRSMHAMLLKCEQMESAQIFLDAMMNSSDPCQVQLCKEKSRAPPPLVPLSIVMPFDDPTTPINQVNQDHFQNTCMETLSELPCEVEIKEMNTDPIFNAETATCEPLNKKRKLSDMFDMDIQTKVESVLIADIEGAKAPKSNCQTKKEEKRTSILEQVLTGNLTMNNHQKLQPGTKLTSEWWCAPCNSYYKTKDSLMTHMQLHCPRVYTCRKCSASFESVEILAKHEANNHLKVKMDFTENLNDCDQCDRQFVRWEMLKQHRLRDHLAELTDGSNTRCSLCNRFFPTVESYQKHVQLHQTNSAISQKLPSSEFMITKIPERIREIKRDEQCCERSLKCPTCGKICTQQSALSNHMRTHEPKKHKCDICGRSFGLFIRLAGHRIAEHNEQPMMSPVLSAVEQEEALNAEREAREAREAKSRSIKKSYSEIMEKNDIPVDNESVTKRISGGNKNVARCGICSQWFSDHTTMLTHLQTHSESHKSYTCNICKKSFKEQSQLLKHEASHKRQTLDNASLYTSTVYNKSLVDKAQQKTHTVAKTYHCAKCNKIFFKEVSLLAHICRDTAQLEKKVAEKKSRLKTSLHVGNKTHKCSKCDATFASSQSRNAHMKMHAEYMRGSTVQTHEIKVEADDEPMPKLRPETLEYISPIEPKVEINEQGTPPPLKRTLIKTNNGYRCGVCQSPFVLRELAVAHLRSAHPVMPYQCPYCKKRFTTQYTFAHHIKTEHPDEPEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126946;
- 90% Identity
- iTF_00417811;
- 80% Identity
- -