Ccot000259.1
Basic Information
- Insect
- Cyphomyrmex costatus
- Gene Symbol
- prdm10
- Assembly
- GCA_001594065.1
- Location
- NW:18536-25326[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0015 0.094 12.6 0.3 2 23 523 544 522 544 0.96 2 11 0.00025 0.015 15.1 0.3 2 23 557 578 556 578 0.95 3 11 0.013 0.83 9.7 3.3 1 19 595 613 595 617 0.93 4 11 0.00029 0.018 14.9 0.3 2 23 626 647 625 647 0.97 5 11 0.0017 0.11 12.5 0.2 1 23 654 676 654 676 0.98 6 11 0.00022 0.014 15.3 2.5 1 23 683 705 683 706 0.95 7 11 0.0015 0.093 12.7 4.3 1 23 711 733 711 733 0.98 8 11 7.4e-06 0.00046 19.9 4.0 1 23 739 762 739 762 0.96 9 11 0.00058 0.036 14.0 1.3 1 23 795 818 795 818 0.97 10 11 3e-05 0.0018 18.0 2.4 1 23 840 863 840 863 0.97 11 11 0.0016 0.096 12.6 3.4 3 23 901 922 899 922 0.96
Sequence Information
- Coding Sequence
- ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCCGAGTCCTTCGAGATATCCAGTATCGACAGAGGAGCTGACATCTCGGTGAATTGGCCTACGGATCATCCTTTTGCCTCGTCGCTATGCGAACAGCCGAAAAAGTTGAACAACAGGCTCCTATTCTTGACTGTGGAATATGTGGAAGATCAATCCCGGTTGTTTCCTACGTATGAGCAGATCTCTTTTTCTCCGAGGGCAGCCTCTCCTCTATCAGACTTTGAGCATCGAGTCAGCCCACTGGATCCAAATATGAGCTCTACTGCTAGATATTCTCCTACACCAGTCCAACTGCCTTCCTCTCCTTTCCATAATTCTGTTGTCGTGCTGCAAGGTCCAACCTCACCCTTGATGTCCCAGCCTGAACCGAATATACGAACCAGCATCAATTATGTGACTCAGCTGGCTCATCCGATCGACACTCAGACAGTACCTCAAACGGATGGTACCACAGACTTTGTTGGCAATGGGAATGAAGATGGACTAGTGTCCAGTGTCAGTAGCGAATTGATTTTAATGCAggAAACTGCACCTGAGTTGGAATCTTCGACAACTCCCTTGATGCTAACAGGAATACCAGGCACAGATTTTGCTCTAACTAGAGATTTTTTGGTAATGCAGGATgatcaaataaatgttatcaACACGTTTAAAAATCAGAACATGGAGATAGAGGACAACTCTATCACTTTACCTATAACTGAAGAtgcaaataaagaaaacaacaATCTTGCTTTGTCAGAGTGTGATAAAGAAATTCAACAAATTACTGAAGATCCATTGTCCACTGaggagataaaaataattgagaagAAAGATGTAAGGAGATCCAAACGACATATAAcagataagaaaaaattttGGGGAGATGACGAATATGACGGTAATTGTGCCAAAGACGATAGCTCTAATTTGACTGATGTATGCACTATCGCAGATCAACCTGTACCATCGCGTGCTGTAGCAACACTGCCAGGATCCTATCTTTTGTTAAACAAGCTATCTACATCACATGGTTCAGCAAATAATGTAACCTATGGGGTTTTTGCGAAACGTAATATACGAAGACGCACGCAATTTGGACCTATAGAAGGTGTATTGTGCACTTATGATGGCTCGCCTTTTGAGAATACTTTGCCGCTGCTCTTTGAAACTCAGGATGGAGAATTCTTGAAAGTAGATGTTTCCAACGAAAatacttcAAACTGGATGCGTTTTGTACGACCTGCACTGACATATAAAGAACAAAATCTAATCATTTGTCAACAGAAAGATGGAATAGTGTTTTTGactaatagaaatattttgccAAAAGAAGAACTGAAGGCAGGTCCTAGTCCAGACTATGCAAATCGCAGAAATTTACCAATACTCAAACCAGatataaaagatgaaaaagCAGAAGTGGTAAACCAAACATCCACATGGCCACGTTTGGATAATCATTCTTATAAtcgatacataaaaatgtttcgtgACAGGAATATGAAAGAAAAGGAGAACTCGCGGCAGAATAAGTGTAACAAGGATTGGAAATGTTCCGTGTGTAACTTGATTTTCAGGACTGCATGTCTACTTAACTTGCATGTGGCCGTTCATTTTTCTAACGATATCAAAATTGAGAATCAAATGTCCACATGCCCACAATGTGGACAAGAATTCCAGAAACAAAGCGAATTGGTGAATCATGTGTCTCAGCACGGACGAACGGCGTTATCTAAGGCAAAGCGACTAACTCCTCTAGGTTCATACAAGTGTTCAATGTGTTACAAACGTTTTGCTACAAAGATACGATTACAACAGCACTGCTTGGCGCATGGTGCTGAGGACCAAAAACCACTGCCATGCAGTATCTGCTTGAAACGATTTATGAACAACTCTGCGTTGTCTGGTCATCTGAAAACGCATAAAGAAAACAAACAAGTCTTTGAGTGCCCGATATGCAGGCAGCTGTTTCGCCAAGGTACGATGCTGAAAGATCACGTTGAAACACATAGAAATCAAGATGGTATATTCAGTTGCCCTTACTGCCAGCGAACATTCATTAAGTATTCCGTCATTCGCAAACACATTCGGGCACATCATTGTGAAAGGAAGCACAAGTGTCAGCATTGTGCGAAACGTTTTCCAACGGTCGACAAATTGCAAATGCATCTGTTAAAGCACTCCGATCACAgAGAATTTCATTGTGCAAACTGCGGTAAACGATTCAAAAGAAAGGATAAATTGAAGGAACATATGACGAAAATACACCAGTCTCAAACGGTTAATAGAGAACAAATGACACAGAACAACCAGGCGAAGAAATTTGTGCCAAAGataaatcCGAGTGATTATAATCGCTTCATTTACAAATGTCATGAATGCCTGGTGGGTTTTAAACGAAGGGGAATGCTGGTGAATCACTTAGCGAAGCGGCATCCTGATGTCGCTCCCGAATCTGTGCCAGAATTAAACTTACCTATCTTTCGACAAACCAGAGACTACTATTGCCAATATTGCGACAAAGTTTATAAAAGTAGCAGCAAGCGTAAAGCACATATCATGAAGAACCATCCTGGCGCGGCCTTGCCGCCTAGTAACCGACAGGAGGAATCCCAATTCTCAGGACTGCCAAATCCAAGCTTTAGCCAGACAGTGGGCAGTATTACGACTAGTCCTCAAAATTGCCAGTGGTGTCATAAACAATACGCTAGCaagGCAAAGCTCTTGCAACATCAACGTAAGAAGCACGCGCATCTGATGGAGCCGGCGGATCAAGTACCGCGATCGCGAACTCGGCCACCACAAAATCAAAATCAACCACCCACGCTGAACGATAACAACTTTGTGATATCCGATTATATACAAGCATGCGACGGAGATTTCCTGAAACAGAAAATAATCAAACTAACGAACGACGTTGATCTGATAGGCAATGGTGGCTTGGAGATGATCGGTCAACAGTTCGTACGTATGCGCGATATACGTTGA
- Protein Sequence
- MDPRGPPEGAPAESFEISSIDRGADISVNWPTDHPFASSLCEQPKKLNNRLLFLTVEYVEDQSRLFPTYEQISFSPRAASPLSDFEHRVSPLDPNMSSTARYSPTPVQLPSSPFHNSVVVLQGPTSPLMSQPEPNIRTSINYVTQLAHPIDTQTVPQTDGTTDFVGNGNEDGLVSSVSSELILMQETAPELESSTTPLMLTGIPGTDFALTRDFLVMQDDQINVINTFKNQNMEIEDNSITLPITEDANKENNNLALSECDKEIQQITEDPLSTEEIKIIEKKDVRRSKRHITDKKKFWGDDEYDGNCAKDDSSNLTDVCTIADQPVPSRAVATLPGSYLLLNKLSTSHGSANNVTYGVFAKRNIRRRTQFGPIEGVLCTYDGSPFENTLPLLFETQDGEFLKVDVSNENTSNWMRFVRPALTYKEQNLIICQQKDGIVFLTNRNILPKEELKAGPSPDYANRRNLPILKPDIKDEKAEVVNQTSTWPRLDNHSYNRYIKMFRDRNMKEKENSRQNKCNKDWKCSVCNLIFRTACLLNLHVAVHFSNDIKIENQMSTCPQCGQEFQKQSELVNHVSQHGRTALSKAKRLTPLGSYKCSMCYKRFATKIRLQQHCLAHGAEDQKPLPCSICLKRFMNNSALSGHLKTHKENKQVFECPICRQLFRQGTMLKDHVETHRNQDGIFSCPYCQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLQMHLLKHSDHREFHCANCGKRFKRKDKLKEHMTKIHQSQTVNREQMTQNNQAKKFVPKINPSDYNRFIYKCHECLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPIFRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRQEESQFSGLPNPSFSQTVGSITTSPQNCQWCHKQYASKAKLLQHQRKKHAHLMEPADQVPRSRTRPPQNQNQPPTLNDNNFVISDYIQACDGDFLKQKIIKLTNDVDLIGNGGLEMIGQQFVRMRDIR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00885376;
- 90% Identity
- iTF_01523591;
- 80% Identity
- -