Ccot008255.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cyphomyrmex costatus
Gene Symbol
Lztr1
Assembly
GCA_001594065.1
Location
NW:886889-892271[+]

Transcription Factor Domain

TF Family
BTB
Domain
zf-C2H2|ZBTB
PFAM
PF00651
TF Group
Zinc-Coordinating Group
Description
The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.2e-15 2e-13 49.9 0.1 4 108 367 498 364 500 0.86
2 2 6.2e-19 1.1e-16 60.4 0.0 7 97 590 678 584 707 0.86

Sequence Information

Coding Sequence
ATGAAATATCGCGTCCACAGCCGCGCGAAAATGGACAACGTGGCGGCAACCGCCGAGTGCGCGGATGCGATGACACTGAATTTCGGCCCATTTGAAACGGTGCATCGATGGCAACGCATGCCGGAGTGCGCCGAGTTCGTTGGCGCCAGTCGCAGCAAACACACTATGGTGGCGTACAACGATGATATTTACGTTTTTGGTGGTGATAATGGTAAGAAGATGCTGAATGATGTACTTCGCTTTGACGTGAAAGAGAAGTCCTGGGGTAGAGCATTAGCTACTGGCGTATTACCTACATCACGTTACCACCACTCTGCAGTCATCCATGGCTCATCGATGTTTGTATTCGGTGGTTATACAGGGGATATACACTCTAATTCCAatcttagtaataaaaatgatctGTTCGAGTATTGCTTTCTGACTGGTCACTGGACACCATGGAGATTTGATGGAAAgGCTCCAGTACCTAGGTCTGCTCATGGTGCTGctgtatatgataataaattatggaTATTTGCGGGCTATGATGGCAATGCTAGGTTGCATGATATGTGGACGATATCATTATTGCCTGGTGAAAACAAAGCGTGGGAGGAGGTCGTACAAGTTGGTGAACGTCCACCGACATGTTGTAATTTCGCCGTCACAGTGGCTCGAGAATCGATGTTCGTTTTCAGTGGTCAGAGCGGAGCTAGAACAACTAATAGTCTCTTCCAGTTTCACTTTAAGGAGAAACGGTGGACGCGCATATCGACGGAGCATATATTGCGTGGCGCACCACCACCGCCCGCAAGACGATACGGTCATACGATGGTCAGTTTTGATCGTCATCTTTACGTTTTTGGCGGTACGGCTGACTCAGCTCTGTCCAATGAGCTCCATTGTTATGACCTTGATACGCAAACGTGGAACGTTATTTCACCGTCCACAGACAGTGAGGTACCATCTGGTCGACTTTTCCATGCCGCTGCTGTGATCGGAGATGCGATGTTCATTTTTGGAGGAACCGTGGACAACAATATACGCTCTGCAGAGATGTACCGCTTCCAATTCTCGTCTTATCCTAAATGTACATTACACGATGATTTCGGTAGGCTACTAAATTTGAGCCTCTTCTGTGACGTGGAATTCATAGTGGGCGAGCTGGAAACCAAGATACCGGCGCATATAGCCATGGTGGCGGCGCGTTCGCAATTTCTTCGGACGCTCATTCGTCAAGCGCGCAACAAACGAGACAAGCAAAAACTCATTGATGTGCCCACTAACGTATCGTCACTACTGGAGGTGAGATTAAAAGATGCTGTACCAGAAGCTTTCAAAATGGTGCTGAACTATATTTATACCGATCGTATCGATCCTAAAAGACTAGATGACAGGATTGAGGACCCACAGAGTAATCGTATTGTACTTCTTATGATAGACGTCTATCGTCTCGCCGAGCAATTCCATATGAAACGCTTAGAACAGTTGTGCATTAATTACCTTGAAGCAACCATAAGCCACACGAATGTCTTGGAAGCGTTGTGCAACGCCGTACActtgaaattgtattttataaaggaCTTTTGTCTCAGCTTTGTTGTGAAGGATAATAATTACGGTCTAATCGTGATGAGTCAGGAGTTCGAGACTTTGGATCAGCCGTTGATGGTAGAGATCGTCAGGCGAAGGGAGTTATCGCAAACTAAAACCATTACAAAGTATGAATCTGTCATTGGAACTAATCTAGAGCAAGACATGGAAGCATTTTTAAAGAGTTTCGGTCAGGAATTTTGTGATATCACATTGGAGTTGGACGGTATGTCGATACCGGCGCACAAAGCTATTCTTGCGGCAAGATGCGGCTACTTTGAAGGACTGTTTCGATCCACGCCAGGAAATAATAAGGCAAACGTACAAATTGGCGAAGCGATACCGCCGTTCGAATCATTTTACTCTTTACtgaagtatatttattacgcGAATGTCTCAATGCCTCCTGAGGATTCTCTATATTTGTTTGCTGCATCAGAATACTACAGTTTTACGAACAATCGACTCAAGGTGTTTTGCAAACAAAATCTCGAAATGAATGTTACTTTCGAGAATGTTATACCGGTTTTAGAGGCAGCCGAGAAAACGCACAATAtcgatatgaaaaaatatgccCTCAATCTGATAGTTCATCACTTTAGCAAGGTTGCCAGGCTTCCAAAATTAAGAGAATTAAGTCGCGAGCTTTTACTAGATATTCTCGATGCTTTAGCTGATGATCGCAGCGAAGCTAGAACATGTCAAGATATGACTACTGATTGCTGA
Protein Sequence
MKYRVHSRAKMDNVAATAECADAMTLNFGPFETVHRWQRMPECAEFVGASRSKHTMVAYNDDIYVFGGDNGKKMLNDVLRFDVKEKSWGRALATGVLPTSRYHHSAVIHGSSMFVFGGYTGDIHSNSNLSNKNDLFEYCFLTGHWTPWRFDGKAPVPRSAHGAAVYDNKLWIFAGYDGNARLHDMWTISLLPGENKAWEEVVQVGERPPTCCNFAVTVARESMFVFSGQSGARTTNSLFQFHFKEKRWTRISTEHILRGAPPPPARRYGHTMVSFDRHLYVFGGTADSALSNELHCYDLDTQTWNVISPSTDSEVPSGRLFHAAAVIGDAMFIFGGTVDNNIRSAEMYRFQFSSYPKCTLHDDFGRLLNLSLFCDVEFIVGELETKIPAHIAMVAARSQFLRTLIRQARNKRDKQKLIDVPTNVSSLLEVRLKDAVPEAFKMVLNYIYTDRIDPKRLDDRIEDPQSNRIVLLMIDVYRLAEQFHMKRLEQLCINYLEATISHTNVLEALCNAVHLKLYFIKDFCLSFVVKDNNYGLIVMSQEFETLDQPLMVEIVRRRELSQTKTITKYESVIGTNLEQDMEAFLKSFGQEFCDITLELDGMSIPAHKAILAARCGYFEGLFRSTPGNNKANVQIGEAIPPFESFYSLLKYIYYANVSMPPEDSLYLFAASEYYSFTNNRLKVFCKQNLEMNVTFENVIPVLEAAEKTHNIDMKKYALNLIVHHFSKVARLPKLRELSRELLLDILDALADDRSEARTCQDMTTDC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01476994;
90% Identity
iTF_01476994; iTF_00181379; iTF_00016100; iTF_01261894; iTF_01476329; iTF_00016748; iTF_00014799; iTF_00015448; iTF_00182040; iTF_00182686; iTF_01477694;
80% Identity
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