Basic Information

Insect: Cyphomyrmex costatus
Gene Symbol: bab2
Assembly: GCA_001594065.1
Location: NW:530165-596846[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 6.2e-13 6.6e-10 38.0 0.0 1 39 381 420 381 424 0.90

2 4 3.8e-13 4e-10 38.6 0.1 2 39 436 473 435 476 0.94

3 4 6.9e-20 7.4e-17 60.2 0.0 1 45 490 535 490 535 0.98

4 4 1e-18 1.1e-15 56.5 0.1 1 42 542 584 542 585 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	6.2e-13	6.6e-10	38.0	0.0	1	39	381	420	381	424	0.90
2	4	3.8e-13	4e-10	38.6	0.1	2	39	436	473	435	476	0.94
3	4	6.9e-20	7.4e-17	60.2	0.0	1	45	490	535	490	535	0.98
4	4	1e-18	1.1e-15	56.5	0.1	1	42	542	584	542	585	0.97

Sequence Information

Coding Sequence: ATGGTGAGCGGCGGCATGGCCGGGCAGCACTACTGCCTGCGTTGGAACAACTACCAATCGAATATGACGTCGGTGTTCCACCAGCTCCTGCAGACCGAGGCCTTCGTCGACGTCACCCTGGCGTGCAATGAGGCCTCGTTAAAGGCGCACAAGGTGGTGCTGTCGGCTTGCAGCTCCTATTTCCAGAAGCTCCTGCTGTCGAACCCCTGCAAACACCCGACGATCATCATGCCCCAAGACGTCTGCTTCAACGACCTCAAGTTCATCATCGAGTTCGTCTACCGCGGGGAGATCGACGTTTCGCAAGCGGAGCTTCAGTCGCTCTTGAAGACGGCCGACCAGCTAAAGATCAAGGGCCTCTGCGAGGTGCCAGAGAACAGGGACGGTCCGCCACCCGTAAGTCTGAGCTCGCCGCCGAGAGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCATCAGAGATACAAAAAACCCAGACTCGAGCGGCCCACATTCGAACCGCGTCCTACCGATCCGAGGCACTACGATCGCTACAAGGAGGAAGAGGCCAACGATTACAGCCGTGATAACAAAGAGAACCATCGGGACTGGCAGGCTGAAGATGAAGAGTGCACGGAGACAGCAACAGTAGCAGTAGTACTGGACACTTGccaacgtaataataataacaataacaacaacAACGGTAACGGCACGAGTAACAATAGTGACATGTTCTGTCACACAGGGCTAGGGCATTATGGCCACCATCCAGATCCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCTACCCCACCCAGCGCCACTCTGGTCGGCACTACCATCACCCACTTGAGGGATCCGGATCATCATAcagAGATTCAGAATTGCGACAGCGTCAAGATCAAGTTTGAAACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGATAGCCACATGTCGGATCGGGCGAGCGTAAGTTCAAAGAACGCCGCCGACAGCGATAACATGATGATGATAACACCGGAGCTATTGGGACTGATGCCATCGGGAAGCTCCGGTCAGTCGGACTCGGGTGAGAATAACTCGAGGGGGCACAGCGGACAATCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGATGCGGCTTTAGAAGCGCTGAGGAATCACAACATGAGCCTGACAAAAGCTTCAGcaacATTCGGTATTCCCTCGACGACACTATGGCAACGGGCGCATCGATTGGGCATCGATACACCGAAAAAAGACGGCCCTACGAAATCCTGGAGTGACGAAAGTTTGAACAATGCCTTAGAAGCGTTGCGTACCGGTTCCATTTCGGCTAACAAGGCGTCCAAAGCATATGGCATACCCTCCAGCACGTTGTATAAGATCGCCAGGAGGGAAGGTATTAGATTAGCCGCACCGTTCAACGCGAGTCCCACTACATGGACACCTACCGATCTAGACCGCGCTTTAGAGGCAATAAGATCTGGTCAGACGTCCGTACAGAGAGCGTCAACGGAATACGGTATACCTACGGGAACTCTTTACGGAAGATGCAAGCGAGAAGGAATCGAGCTTAGTAGGAGTAATCCTACGCCTTGGAGCGAAGATGCTATGACTGAAGCTCTCGAAGCAGTCAGATTAGGACACATGAGCATAAATCAAGCGGCAATCCATTATAATCTGCCGTATTCGTCATTATACGGACGCTTCAAAAGGGGCAAATACGAGGAACCAGTCGTCGGTGATATCTCGCAGGATGGTACAAGTCCGCATTTCCATCAGAGCCCTAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTACCCGGGCAGTTGA
Protein Sequence: MVSGGMAGQHYCLRWNNYQSNMTSVFHQLLQTEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKKPRLERPTFEPRPTDPRHYDRYKEEEANDYSRDNKENHRDWQAEDEECTETATVAVVLDTCQRNNNNNNNNNGNGTSNNSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPTDLDRALEAIRSGQTSVQRASTEYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_01520386;
80% Identity: iTF_00417698;