Cimp060367.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- -
- Assembly
- GCA_030704885.1
- Location
- JARQZK010004339.1:726217-727656[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00016 0.049 16.3 0.4 2 23 100 122 99 122 0.95 2 13 0.00092 0.28 13.9 0.7 2 23 129 151 128 151 0.95 3 13 3e-05 0.009 18.6 3.3 1 23 157 180 157 180 0.97 4 13 0.0014 0.41 13.3 1.5 2 23 187 209 187 209 0.97 5 13 0.00037 0.11 15.1 4.6 1 23 215 238 215 238 0.97 6 13 0.00012 0.037 16.6 2.0 2 23 245 267 244 267 0.97 7 13 9.5e-05 0.028 17.0 3.2 1 23 273 296 273 296 0.97 8 13 2.9e-05 0.0087 18.6 2.5 2 23 303 325 302 325 0.97 9 13 0.098 29 7.5 1.7 2 23 332 354 332 354 0.95 10 13 0.04 12 8.7 6.9 1 23 360 383 360 383 0.96 11 13 5e-05 0.015 17.9 3.9 1 23 389 412 389 412 0.97 12 13 3.3e-07 9.8e-05 24.7 2.1 1 23 418 441 418 441 0.98 13 13 0.00012 0.037 16.6 6.0 1 23 447 470 447 470 0.95
Sequence Information
- Coding Sequence
- AtgaaattgtttaattgttcTTTTTATTACAGGAACTCTAACTCTGTTAAAACAGAAATAAGTGAGAATTTTGACGCAGGATATGATTCTAAAGAGTTTATACTTTCTAATCTAGAAGCAGAAAAAAAGACGAATGAAGAAAAACTTGAAGACGGGAATAATCAGTCACTAAATAACGAAACTGAATGTACTAGGATCAAAATAAAGGACGTCAATGAGATGGACTTTATACAGGCGGAACGAGAGGTCAAACAATGTGACGTTCCATCGCGCATAGATTCGAAACTGATGAGTCTCAAATGTAATTTCTGCGACTACATTTCATCTTCGAAAGGATACCTTCAAACGCATATCAGAGCGATCCATTTGAATCTGCGAAACCTGAAATGTCACTGGTGCGGATTTAGTTCGGCATTTAAACCGAGCCTGCAGAAGCACATAGATTCGGTACACTTGAAACTGAAGAATCATAAATGTCACATATGTGATTATATCTCGTCACGGAAAGGGGATCTTCAGTCTCATATAAAGTCGAACCACTTGCAAATGAAGAACGAAAAATgtcacttatgcgattacagttcgTCATTAAAAGTGAACGTTCAAAGGCATATCAATTCGGTTCATTTGAAACTGAGAAATCACAAATGTCACGTATGTGATTTTACCTCGTCGGAGAAAGGGCACCTTCAATGGCATATAAAGTCGATTCACTTGAAAATGAAGGAGAAAAAATGTCACCTATGCGATTACAGTTCGTCATTGAAAGTGAACCTTCAAAGGCATATCAATTCGGTTCATTTGAAACTGAGAAACCACAAATGTCATTTATGTGATTTCACTTCATCGGATAAAGGGCAGCTTCAGTCGCACATTAACTCTGTtcatttgaaattgaagaaTAACAAATGTCACGTATGTGATTATAGCTCGTCACGAAAGCGGGACCTTCAGTCGCATATAAAGTCGGTCCACTTGAAGATGAAGAACGAAAAATGTCACTTATGTGATTACCGTTCCACATTGAAAGTGAAAATTCAAAGGCATATCGATTCAGTTCATTTGAAACTTAGAAACCACAAATGTCACCTATGTGATTTCACCTCGTTTGAGAAAAGGCATCTTCAATCGCACATCAACTCCGTGCATTTGAAACTTAAGAATCATAAATGTCACTTATGTGATTACACCTCGTCGCAGAAAGCGCAACTCAAATCTCATATTAACTCCGTGCAtttaaaattgaagaattataaATGTCACATATGTGATTATAGCTTGTCACGGAAAAGTGACCTTCAATCGCATATAAAGTCGGTGCACCTGAAATTGAAAAGCCACAAATGTGACGAATGCGATTATAGCTCGTCAACTTCATCGAACTTACGGAAACATAAACATTCAAGGCACTTGAAAGTAAAAATTGAGAAATGTGACTAA
- Protein Sequence
- MKLFNCSFYYRNSNSVKTEISENFDAGYDSKEFILSNLEAEKKTNEEKLEDGNNQSLNNETECTRIKIKDVNEMDFIQAEREVKQCDVPSRIDSKLMSLKCNFCDYISSSKGYLQTHIRAIHLNLRNLKCHWCGFSSAFKPSLQKHIDSVHLKLKNHKCHICDYISSRKGDLQSHIKSNHLQMKNEKCHLCDYSSSLKVNVQRHINSVHLKLRNHKCHVCDFTSSEKGHLQWHIKSIHLKMKEKKCHLCDYSSSLKVNLQRHINSVHLKLRNHKCHLCDFTSSDKGQLQSHINSVHLKLKNNKCHVCDYSSSRKRDLQSHIKSVHLKMKNEKCHLCDYRSTLKVKIQRHIDSVHLKLRNHKCHLCDFTSFEKRHLQSHINSVHLKLKNHKCHLCDYTSSQKAQLKSHINSVHLKLKNYKCHICDYSLSRKSDLQSHIKSVHLKLKSHKCDECDYSSSTSSNLRKHKHSRHLKVKIEKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00416981;
- 90% Identity
- iTF_00416981;
- 80% Identity
- -