Basic Information

Insect: Cynegetis impunctata
Gene Symbol: -
Assembly: GCA_030704885.1
Location: JARQZK010004339.1:737908-739431[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00018 0.052 16.2 0.4 2 23 99 121 98 121 0.95

2 14 0.0011 0.34 13.6 0.9 2 23 128 150 127 150 0.95

3 14 3.2e-05 0.0096 18.5 3.3 1 23 156 179 156 179 0.97

4 14 0.0015 0.44 13.2 1.5 2 23 186 208 186 208 0.97

5 14 0.00068 0.2 14.3 4.8 1 23 214 237 214 237 0.97

6 14 1.9e-05 0.0056 19.2 1.1 1 23 243 266 243 266 0.98

7 14 0.00013 0.04 16.5 2.0 2 23 273 295 272 295 0.97

8 14 0.0019 0.57 12.9 3.8 1 23 301 324 301 324 0.95

9 14 1.5e-05 0.0044 19.5 1.6 2 23 331 353 330 353 0.97

10 14 0.11 31 7.4 1.7 2 23 360 382 360 382 0.95

11 14 0.0014 0.43 13.3 5.2 1 23 388 411 388 411 0.97

12 14 5.3e-05 0.016 17.8 3.9 1 23 417 440 417 440 0.97

13 14 3.5e-07 0.00011 24.7 2.1 1 23 446 469 446 469 0.98

14 14 0.00026 0.077 15.6 5.3 1 23 475 498 475 498 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00018	0.052	16.2	0.4	2	23	99	121	98	121	0.95
2	14	0.0011	0.34	13.6	0.9	2	23	128	150	127	150	0.95
3	14	3.2e-05	0.0096	18.5	3.3	1	23	156	179	156	179	0.97
4	14	0.0015	0.44	13.2	1.5	2	23	186	208	186	208	0.97
5	14	0.00068	0.2	14.3	4.8	1	23	214	237	214	237	0.97
6	14	1.9e-05	0.0056	19.2	1.1	1	23	243	266	243	266	0.98
7	14	0.00013	0.04	16.5	2.0	2	23	273	295	272	295	0.97
8	14	0.0019	0.57	12.9	3.8	1	23	301	324	301	324	0.95
9	14	1.5e-05	0.0044	19.5	1.6	2	23	331	353	330	353	0.97
10	14	0.11	31	7.4	1.7	2	23	360	382	360	382	0.95
11	14	0.0014	0.43	13.3	5.2	1	23	388	411	388	411	0.97
12	14	5.3e-05	0.016	17.8	3.9	1	23	417	440	417	440	0.97
13	14	3.5e-07	0.00011	24.7	2.1	1	23	446	469	446	469	0.98
14	14	0.00026	0.077	15.6	5.3	1	23	475	498	475	498	0.95

Sequence Information

Coding Sequence: AtgaaattgtttaattgttcTTTTTACAGGAACTCTAACTCTGTTAAAACAGAAATAAGTGAGAATTTTGACGCAGGATATGATTCTAAagagtttatattttctaatctAGAAGCAGAAAAAAAGACGAATGAAGAAAAGCTTGAAGACGGGAATAATCAGTCACTAAATAACGAAACTGAATGTACTAGGATCAAAATAAAAGACGTCAATGAGATGGACTTTATACAGGCGGAACGAGAGGTCAAACAATGTGACGTTCCATCGCGCATAGATTCGAAACTAATGAGTCTCAAATGTAATTTCTGCGACTACATTTCATCTTCGAAAGGATACCTTCAAACGCATATCAGAGCGATCCATTTGAATCTGCGAAACCTGAAATGTCACTTGTGCGGATTTAGTTCGGCATTTAAACCGAGCTTGCAGAAGCACATAGATTCGGTACACTTGAAACTGAAGAATCATAAATGTCACATATGTGATTATATCTCGTCACGGAAAGGGGACCTTCAGTCTCATATAAAGTCGAACCACTTGAAAATGAAGAACGAAAAATgtcacttatgcgattacagttcgTCATTAAAAGTGAACGTTCAAAGGCATATTAATTCGGTTCATTTGAAACTGAGAAATCACAAATGTCACGTATGTGATTTTACCTCGTCGGAGAAAGGGCACCTTCAGTCACACATAAATTCCGTGCATTTGAAACTGAAGAATTACAAATGTCACTTATGTAATTATGGCTCGTCACAGAAAGGGGACCTTCAATGGCATATAAAGTCGATTCACTTGAAAATGAAGGAGAAAAAATGTCACCTATGCGATTACAGTTCGTCATTGAAAGTGAACCTTCAAAGGCATATCAACTCGGTTCATTTGAAACTGAGAAACCACAAATGTCACTTATGTGATTTCACTTCGTCGGATAAAGGTCAGCTTCAGTCGCACAATAACTCTGTTCATTTGAAACTGAAGAATAACAAATGTCACGTATGTGATTATAGCTCGTCACGAAAGGGGGACCTTCAGTCGCATATAAAGTCGGTCCACTTGAagatgaaaaacgaaaaatgtcaCTTATGTGATTACCGTTCCACATTGAAAGTGAAAATTCAGAGGCATATCGATTCAGTTCATTTGAAACTTAGAAACCACAAATGTCACCTTTGTGATTTCACCTCGTCTGAGAAAGGGCATCTTCAATCGCATATCAACTCCGTGCATTTGAAACTTAAGAATCATAAATGTCATTTATGTGATTACACCTCGTCGCAGAAAGGGCAACTCAAATCTCATATTAACTCCGTGCAtttaaaattgaagaattataaATGTCACATATGTGATTATAGCTTGTCACGGAAAAGTGACCTTCAATCGCATATAAAGTCGGTGCACCTGAAATTGAAAAGCCACAAATGTGACGTATGCGATTATAGCTCGTCAACTTTATCGAACTTACGGAGACACAAACATTCAAGGCACTTGAAAGTAAAAATTGAGAAATGTGACTAA
Protein Sequence: MKLFNCSFYRNSNSVKTEISENFDAGYDSKEFIFSNLEAEKKTNEEKLEDGNNQSLNNETECTRIKIKDVNEMDFIQAEREVKQCDVPSRIDSKLMSLKCNFCDYISSSKGYLQTHIRAIHLNLRNLKCHLCGFSSAFKPSLQKHIDSVHLKLKNHKCHICDYISSRKGDLQSHIKSNHLKMKNEKCHLCDYSSSLKVNVQRHINSVHLKLRNHKCHVCDFTSSEKGHLQSHINSVHLKLKNYKCHLCNYGSSQKGDLQWHIKSIHLKMKEKKCHLCDYSSSLKVNLQRHINSVHLKLRNHKCHLCDFTSSDKGQLQSHNNSVHLKLKNNKCHVCDYSSSRKGDLQSHIKSVHLKMKNEKCHLCDYRSTLKVKIQRHIDSVHLKLRNHKCHLCDFTSSEKGHLQSHINSVHLKLKNHKCHLCDYTSSQKGQLKSHINSVHLKLKNYKCHICDYSLSRKSDLQSHIKSVHLKLKSHKCDVCDYSSSTLSNLRRHKHSRHLKVKIEKCD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00416997;
90% Identity: iTF_00416997;
80% Identity: -