Cimp036477.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- clz9_18
- Assembly
- GCA_030704885.1
- Location
- JARQZK010002294.1:37507-42355[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.6e-08 8.9e-06 27.5 0.0 2 37 33 68 32 75 0.89
Sequence Information
- Coding Sequence
- ATGTCCCTCCGATACCGTGTGGAGCTCCTTTACCATCCCCAGCTTCGTGATATTTCCAGCGTCTACTTGGTGctcgaaattataaaaaattattctgatGAAAAACTTCAACAGGCTGTCGATGAAATTAAGAGCAAATCGATTTCTCTCCGAAGTGCAGCAAAAAAGTATCAGATAGCGAAAAACACTTTATGGAATAAAATTCATGGAAAGCATACTCGCAGACATGGTAAGCCAAGAGTCTTTTCAGAAGATGAGGAAGAATCATTCGCTGGACACTTAATTGCTCTATCGGCCTTTGGATTTCCAATAACAGCTGAAGACCTTAAAGTATGCGTGAAGTCTTACTTGGACAGGCAAGGAagaaaagttttttgttttaaaaacaattatccAGGTCCTGACTGGGTAGCTTTATTTTTAAAGCGCAGGCCAGAACTAAGTCAAAGATTCTCTCAAAATATTACGCGCGCACGAGCAGGAACCGACGAGACTGTGATTAATGCGTACTTTGATAACCTCCAAAATGAGCTGGAAGGGGTCCCTCCATCCAATATCTACAATTATGACGAAACAAATCTTGTCGATGATCCAGGACGATCCAAAGTTATAACAAGAAAGGGAACCAAATACCCTGAGAAAATTCGCAATTCTTCTAAAGCATGTACTTCTCTTATGATTTGCGGAAATGCAGAAGGTCAGCTTGCTCCGGTATATATCAATTACAAAGCTCAAAAGCTATGGTCAACCTGGATGGAAGATGGTCCAATGGATGCCCGTTATAACCGTACCAGTAGCGGATGGTTCGACTTCCAAGTATTCGAGGATTGGTTTATCAATCTGATGCTTCCGATTCTAAAACGAAAAGAGGGGCGGAAAATTTTAATTGGGGACAACCTTAGTTCCCACCTTAACGTAGAGGTGATCAGACAGTgcgaattaaataatataaggtTTATTGCACTGCCCCCTAATGCTACGCACATCCTGCAGCCGTTGGATGTAGCTTACTTTCGTCCTATGAAGGGACACTGGAGGCAAATCCTAAATGATTGGAAGAATACAGCTGAAGGATGCCGTTTTAGCGGCATACCAAAGGATACTTTTCCTAGGCTTTTAAAAGCTCTGCTGACTAAATTGGAAGAGCGCGGTGCTGAGAATCTTAAATCTGGTTTCAGAAAATGCGGAATCTACCCATTTAATAAAGAAGTCGTATTGAATAGATTGCACGGAAATGTGGTTGCTGACGATCCTGCAATACAAAAAGTTGTTGGTGAAAGCTTTCTGTCACTTCTTGCTCAAACACGCCACGAAACCACAGCGCCCCGTATTCGCAGAAGAAAGAAACTTCAAGTGCCTCCAGGTATAGGTATAACCGTTGCTGATGTACAGAATGCCGCCGAACCTCTCAACAATTCACTACAGCCCTCCACGTCCGGAATCCAGAATAGTAGTAGCATACAAGAGCCTCTTGGAGGTTCAGCTTCTGACGACAGCTCAACTGTTATTGAAATAGAAAGACAAAAATCTAAAAGAACGAAAAACGATTCAGAGAGCTCAGATAGCTTTCAGAGCGTAAAATATGCAGAAAGTGACGCCAGCTTATACAATCCCGAACTTTCAGATGATGAAGCCAGAGTAGAACCAGATGAAGTCAAAAAATCTGCATTTTCCGTTGATACTAAAACAGTTGGAAACTATGTTTtagttatttatgaaaaaaaatattaccctGGACAAATTACGACAGTTCTCAACCATGGTGCCATTGTAAATGTTATGACACCATATGGAAAGCAATGGAAATGGCCACCTCGCAAAGACGAGATATTTTATAGCAACAGAGAAATaataatgtcaataaaaacACCTGAACGTCGTGGACATCGAGAGGTTTTCGATTTTCCAGAATTGAAAGATTTTGTTCAAAGAAACTACACCTATTTCTAA
- Protein Sequence
- MSLRYRVELLYHPQLRDISSVYLVLEIIKNYSDEKLQQAVDEIKSKSISLRSAAKKYQIAKNTLWNKIHGKHTRRHGKPRVFSEDEEESFAGHLIALSAFGFPITAEDLKVCVKSYLDRQGRKVFCFKNNYPGPDWVALFLKRRPELSQRFSQNITRARAGTDETVINAYFDNLQNELEGVPPSNIYNYDETNLVDDPGRSKVITRKGTKYPEKIRNSSKACTSLMICGNAEGQLAPVYINYKAQKLWSTWMEDGPMDARYNRTSSGWFDFQVFEDWFINLMLPILKRKEGRKILIGDNLSSHLNVEVIRQCELNNIRFIALPPNATHILQPLDVAYFRPMKGHWRQILNDWKNTAEGCRFSGIPKDTFPRLLKALLTKLEERGAENLKSGFRKCGIYPFNKEVVLNRLHGNVVADDPAIQKVVGESFLSLLAQTRHETTAPRIRRRKKLQVPPGIGITVADVQNAAEPLNNSLQPSTSGIQNSSSIQEPLGGSASDDSSTVIEIERQKSKRTKNDSESSDSFQSVKYAESDASLYNPELSDDEARVEPDEVKKSAFSVDTKTVGNYVLVIYEKKYYPGQITTVLNHGAIVNVMTPYGKQWKWPPRKDEIFYSNREIIMSIKTPERRGHREVFDFPELKDFVQRNYTYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01187317; iTF_01187299; iTF_00416224;
- 90% Identity
- -
- 80% Identity
- -