Cimp002819.1
Basic Information
- Insect
- Cynegetis impunctata
- Gene Symbol
- clz9
- Assembly
- GCA_030704885.1
- Location
- JARQZK010000026.1:208605-210509[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-08 7.1e-06 27.8 0.0 2 37 19 54 18 61 0.89
Sequence Information
- Coding Sequence
- ATGCCTCGCAAGCCACAGCGTCTACTTGGTGCtcgaaattataaaaattattctgaTGAAAAACTTCAACAGGCTGTCGATGAAATTAAGAGCAAATCGATTTCTCTCCGAAGTGCAGCAAAAAAGTATCAGATAGCGAAAAACACTTTATGGAATAAAATTCATGGAAAGCATACTCGCAGACATGGTAAGCCAAGAGTCTTTTCAGAAGATGAGGAAGAATCATTCGCTGGACACTTAATTGCTCTATCGGCCTTTGGATTTCCAATAACAGCTGAAGACCTTAAAGTATGCGTGAAGTCTTACTTGGACAGGCAAGGAagaaaagttttttgttttaaaaacaattatccAGGTCCTGACTGGGTAGCTTTATTTTTAAAGCGCAGGCCAGAACTAAGTCAAAGATTCTCTCAAAATATTACGCGCGCACGAGCAGGAACCGACGAGACTGTGATTAATGCGTACTTTGATAACCTCCAAAATGAGCTGGAGGGGGTCCCTCCATCCAATATCTACAATTATGACGAAACAAATCTTGTCGATGATCCAGGACGATCCAAAGTTATAACAAGAAAGGGAACCAAATACCCTGAGAAAATTCGCAATTCTTCTAAAGCATGTACTTCTCTTATGATTTGCGGAAATGCAGAAGGTCAGCTTGCTCCGGTATATATCAATTACAAAGCTCAAAAGCTATGGTCAACCTGGATGGAAGATGGTCCAATGGATGCCCGTTATAACCGTACCAGTAGCGGATGGTTCGACTTCCAAGTATTCGAGGATTGGTTTATCAATCTGATGCTTCCGATTCTAAAACGAAAAGAGGGGCGGAAAATTTTAATTGGGGACAACCTTAGTTCCCACCTTAACGTAGAGGTGATCAGACAGTGCGAATTAAATAATATCAGGTTTATTGCACTGCCCCCTAATGCTACGCACATCCTGCAGCCGTTGGATGTAGCTTACTTTCGTCCTATGAAGGGACACTGGAGGCAAATCCTAAATGATTGGAAGGATGCAGCTGCAGGATGTCGTTTTAGCGGCATACCAAAGGATACTTTTCCTAGGCTTTTGAAAGCTCTGCTGACTAAATTGGAAGAGCGCGGTGCTGAGAATCTTAAATCAGGTTTCACAAAATGCGGAATCTACCCATTCAATATAGAAGTCGTATTGAATAGATTGCATGGAAATGTGGTTGCTGACGATCCTGCAATACAAAAAGTTGTTGAGAGCTCAGATAGCTTTCAGAGCGTAAAATATGCAAAAAGTGACGCCAGCTTATACAATCCCGAACTTTCAGATGATGGAGCCAGAGTAGAACCAGATGAAGTCAAAAAACCTGCATTTTCCGTTGATACTAAAAAAGTTGGAAACTATGTTTtagttatttatgaaaaaaaatattaccctGGACAAATTACGACAGTTCTCAACCATGGTGCCATTGTATATGTTATGACACCCTATGGAAAGCAATGGAAATGGCCACCTCGCAAAGACGAGATATTTTATAGCAACAGAGAAATAATAATGGCAATAAAAACACCTGAACGTCGTGGACATCGAGAGGTTTTCGATTTTCCAGAATTGAAAGATTTTGTTCAAAGAAACTACACCTATTTCTAA
- Protein Sequence
- MPRKPQRLLGARNYKNYSDEKLQQAVDEIKSKSISLRSAAKKYQIAKNTLWNKIHGKHTRRHGKPRVFSEDEEESFAGHLIALSAFGFPITAEDLKVCVKSYLDRQGRKVFCFKNNYPGPDWVALFLKRRPELSQRFSQNITRARAGTDETVINAYFDNLQNELEGVPPSNIYNYDETNLVDDPGRSKVITRKGTKYPEKIRNSSKACTSLMICGNAEGQLAPVYINYKAQKLWSTWMEDGPMDARYNRTSSGWFDFQVFEDWFINLMLPILKRKEGRKILIGDNLSSHLNVEVIRQCELNNIRFIALPPNATHILQPLDVAYFRPMKGHWRQILNDWKDAAAGCRFSGIPKDTFPRLLKALLTKLEERGAENLKSGFTKCGIYPFNIEVVLNRLHGNVVADDPAIQKVVESSDSFQSVKYAKSDASLYNPELSDDGARVEPDEVKKPAFSVDTKKVGNYVLVIYEKKYYPGQITTVLNHGAIVYVMTPYGKQWKWPPRKDEIFYSNREIIMAIKTPERRGHREVFDFPELKDFVQRNYTYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00416232;
- 90% Identity
- -
- 80% Identity
- -