Basic Information

Insect: Cynaeus angustus
Gene Symbol: prdm10
Assembly: GCA_030157275.1
Location: CM058062.1:15513514-15520666[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.6e-05 0.0054 17.4 0.1 2 23 430 451 429 451 0.96

2 13 3.8 3.1e+02 2.5 0.0 2 14 483 495 482 507 0.82

3 13 0.0006 0.049 14.4 0.8 1 23 525 547 525 547 0.92

4 13 7.9e-05 0.0064 17.2 1.1 1 23 558 580 558 580 0.96

5 13 8.3e-06 0.00068 20.3 1.7 1 23 593 615 593 615 0.98

6 13 9.6e-06 0.00078 20.1 0.7 2 23 624 645 623 645 0.97

7 13 0.018 1.5 9.8 0.7 1 20 652 671 652 674 0.91

8 13 0.00064 0.052 14.3 2.9 1 23 680 703 680 703 0.96

9 13 0.00014 0.011 16.4 2.1 1 23 708 730 708 730 0.97

10 13 0.0012 0.095 13.5 4.0 1 23 736 759 736 759 0.89

11 13 0.0025 0.2 12.5 1.7 1 23 795 818 795 818 0.97

12 13 0.0007 0.057 14.2 4.5 1 23 840 863 840 863 0.97

13 13 0.0017 0.14 13.0 3.8 3 23 903 924 901 924 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.6e-05	0.0054	17.4	0.1	2	23	430	451	429	451	0.96
2	13	3.8	3.1e+02	2.5	0.0	2	14	483	495	482	507	0.82
3	13	0.0006	0.049	14.4	0.8	1	23	525	547	525	547	0.92
4	13	7.9e-05	0.0064	17.2	1.1	1	23	558	580	558	580	0.96
5	13	8.3e-06	0.00068	20.3	1.7	1	23	593	615	593	615	0.98
6	13	9.6e-06	0.00078	20.1	0.7	2	23	624	645	623	645	0.97
7	13	0.018	1.5	9.8	0.7	1	20	652	671	652	674	0.91
8	13	0.00064	0.052	14.3	2.9	1	23	680	703	680	703	0.96
9	13	0.00014	0.011	16.4	2.1	1	23	708	730	708	730	0.97
10	13	0.0012	0.095	13.5	4.0	1	23	736	759	736	759	0.89
11	13	0.0025	0.2	12.5	1.7	1	23	795	818	795	818	0.97
12	13	0.0007	0.057	14.2	4.5	1	23	840	863	840	863	0.97
13	13	0.0017	0.14	13.0	3.8	3	23	903	924	901	924	0.96

Sequence Information

Coding Sequence: ATGGACACGATTGTGCAGGGACCCCCAGAAGAGGGGGTCCAAGATTTGAATCTAGTCGACGCAACGGAATGGGCATCCCAAAATTCGCAAGAagttgtaaataataattcgaCTTTTTTGTACATAGCCGTCGAGTATGTTAAGGATGAGTACAAAATGGAGCCAGCAGTGAGTTTGGCTCAACCTCAAGACAATTACCCAGATTTTGAACATGTGAGTCCCCTGGATCCAAATATGAGCTCAGTCGCAAGGTATAGCCCCGTTTATAATGAGGCATCAGCTGAGTACAACCCTGTCATTATTCATCATTTGGTGCAACAAGATAATGCACAGAATGacattattaacaatttaactCGAAATTCTCCTTTAGAAGCAATGCCAGTATTGTGCAATAATGATATAAGAGAAGTTGTGGACaaccattttttacaaatggtAAACACAAATGCTGATAATAATGCCCAGCAGCTGCAAGTAGTACCACCAAATGAACAAGAGGTGGCTTTATTAATCACTGATCATGGAACTGGAATTTCATATAGTGTCAGACCTCAAGAATTTTTAGTAGAGCGCTGTTTAGAAGATGAGCAGTTGTTGAATGCTCTAAGCCCTGATCCTTTACTTGATACTCAACTTTTAGCATTAGATGAAAATGCTCTGAAAACTGAATTGAGCgacgaaattattaattctacAGTTGGTTCAGCTGTTAATAGTTACATTTCAAGTCTGAGCACAGTGGTGGATACTGATAACGAATTTAGAATGGAAACCCGGcggcaaaaacaaaatgaagttGAATATGAAGATCAATTATtgTCGAAAGTTTACAGCATTGTGGACAAGCCAGTTTTGTCACGAGCGAGAGCATCTTTGCCAGAGCCTTATCTCAGTCTGAATAAAGTGGATGAAGGATATGGCGTTTTTGCGAAGAAAGCAATACCAAGAAGTACGCAGTTTGGACCTTTGACCGGGGTTCTAAAATCTACCACAGAACCGATAAATCGAAATTCctcagaattaatttttcttattgaaGATGAAAATCATACAATTAATCAGTTGGATGTATCAGATGAAAatgtatcaAATTGGATGCGTTTTATTCGGAAGGCTAATAATTATAGTGAGCAGAACTTGTTGGTAACTCAAGAAGGAAGCTATTTGTATTTTACGACAACGAAAACTGTTCTTCCCAAGCAAGAATTGAAAgtgGGTTATAGTACGCCCTACGCTACCCGCCATAAATTATCGGTATTAACACCAGAAGAAGATAAATCATGGCCCTGCTACGAATGCTCCGAAACTTTCGTATCATCAGAAGCTCTTCAGAAACATTTGAATATTCATGATGGCGACGAAATTGAAGATAATGCAAAGAACCgtaaaaagattctaaaaaataaacgaaaagtGGGAACGAAAAATGGTAGTGAAGCCTTACAATGCAACAATTGTAACGAACTTTTTGTACAACCGGGAAAGATTGCACTGAGACAACATTTGATTGAGAAGCATCTTCTCAGCGGTTTAGATGTGATTGATCAGTATTTCTCATCCGTTATgaattttaaatgtgataaCTGCGACACAACTTTCAATTCGGAGGCTcttcttaaaattcataattatcTTCATGACGCTGATAGTTCAGACGAACAAACGAATCATATTTGTCCTAATTGTCAGAAGAAATTTCCAACACAGCGTCAGTTAGTGACCCATGTTGGGACTCATGCTATTGTCAACACCAAAGCGCCACAACCAGAAACATTTAAGTGTCCAGTTTGTCACAAGATGTTCGCTTTACGGGAGAGACTAAGAcgACACATGTTGGTACATGGTTCTGACGATTCTAAACCTCTCCAATGTAAAACTTGTAATAAacgatttataaataattccgCATTGGCAGGTCACTTGAAGACCCATTTTGTGGGCAAAAAAATCTTCGAATGTCCCATTTGTAAAGAGAGCTTTGACCACGTACTCAAATTGAAGTTGCATGTACCTAAACATTGCGAAAACAATTTGTACTCTTGCCCTCACTGCAACAAAGTCTTTAAGAAGTATAGTATAATTCGTAAACATATCAGAGCTTTTCATTGTGACCAAAAGCATCCATGTCCACATTGCGTAAAGATGTTTCCGACTTTGGACAAATTGAAAATGCATCTTTTACGACACTCCGATCACAGAGAGTTTTTGTGTGCAGATTGTGGTAAACAGTTTAAAcgtaaagataaattaaaagaacacTGTAAAAGAATGCATTCAGAAGAACGTGAAAACGATGTACCAAGACCACAGAAAACTGTTTCTCAGCCAGTTAAGAAATTAAGTCCTAAGACAGAACCCACTGATTTCCACCGTTTTATCTATAAGTGTCACACTTGTCTTGTTGGCTTCAAAAGAAGAGGAATGTTGGTCAACCATCTGGCGAAAAGACACCCAGATATAAGCCCAGATTCAGTCCCTGAATTGAACTTGCCAATTTTACAAACCACGCGAGACTATTACTGTCAGCATTGTGATAAAGTTTACAAAAGTAGTTCAAAACGAAAATTACATATCTTGAAGAACCATCCTGGTGCTGCCTTGCCGATGAGTAACAGAAAACAAGGAAATTTCCAAGAGAGTTCGGGTTTACCGAATCCGACTTTTTCACAAACCGTTGGGAGCATCACCACAAGACCACAGAATTGCAAATGGTGTCATAAACAGTATGCGAGCAAAGCAAAACTGTTACAACATCAGAGAAAGAAACATAGCGAGCAGTTGGCCCAACAGACCGACAATGATGGGAAGGTGGGCAAAGAAGTGAATGACCAGAAATTTGTGTCACCATCACAAGGTGGAGATGGACAACCCGATGAAAGTTGTCTGCAGGACGAATTTAAGGTGACGGAAACAGATATTCTAAATAGTGCTTTAGAAGAATACAACGGAGGCCGGGAAGGAGAACAATATTGTCACTTGATTGCAATAGCCGGCACTGATGGATTTGAACAAACTACTGATCTTAACGCTCCCAGTTCGCATCTGTATCGCTTACTGACGACAGCCAatgaaCTCCCAGGTTTAGTACCTCCACGTTGA
Protein Sequence: MDTIVQGPPEEGVQDLNLVDATEWASQNSQEVVNNNSTFLYIAVEYVKDEYKMEPAVSLAQPQDNYPDFEHVSPLDPNMSSVARYSPVYNEASAEYNPVIIHHLVQQDNAQNDIINNLTRNSPLEAMPVLCNNDIREVVDNHFLQMVNTNADNNAQQLQVVPPNEQEVALLITDHGTGISYSVRPQEFLVERCLEDEQLLNALSPDPLLDTQLLALDENALKTELSDEIINSTVGSAVNSYISSLSTVVDTDNEFRMETRRQKQNEVEYEDQLLSKVYSIVDKPVLSRARASLPEPYLSLNKVDEGYGVFAKKAIPRSTQFGPLTGVLKSTTEPINRNSSELIFLIEDENHTINQLDVSDENVSNWMRFIRKANNYSEQNLLVTQEGSYLYFTTTKTVLPKQELKVGYSTPYATRHKLSVLTPEEDKSWPCYECSETFVSSEALQKHLNIHDGDEIEDNAKNRKKILKNKRKVGTKNGSEALQCNNCNELFVQPGKIALRQHLIEKHLLSGLDVIDQYFSSVMNFKCDNCDTTFNSEALLKIHNYLHDADSSDEQTNHICPNCQKKFPTQRQLVTHVGTHAIVNTKAPQPETFKCPVCHKMFALRERLRRHMLVHGSDDSKPLQCKTCNKRFINNSALAGHLKTHFVGKKIFECPICKESFDHVLKLKLHVPKHCENNLYSCPHCNKVFKKYSIIRKHIRAFHCDQKHPCPHCVKMFPTLDKLKMHLLRHSDHREFLCADCGKQFKRKDKLKEHCKRMHSEERENDVPRPQKTVSQPVKKLSPKTEPTDFHRFIYKCHTCLVGFKRRGMLVNHLAKRHPDISPDSVPELNLPILQTTRDYYCQHCDKVYKSSSKRKLHILKNHPGAALPMSNRKQGNFQESSGLPNPTFSQTVGSITTRPQNCKWCHKQYASKAKLLQHQRKKHSEQLAQQTDNDGKVGKEVNDQKFVSPSQGGDGQPDESCLQDEFKVTETDILNSALEEYNGGREGEQYCHLIAIAGTDGFEQTTDLNAPSSHLYRLLTTANELPGLVPPR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01480343;
90% Identity: iTF_00753226;
80% Identity: -