Cfor008435.1
Basic Information
- Insect
- Cylas formicarius
- Gene Symbol
- -
- Assembly
- GCA_029955315.1
- Location
- JARGXY010000004.1:34301807-34304908[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.00069 7.9 7.0 0.0 18 47 203 232 193 238 0.82 2 6 3.7e-05 0.43 11.1 0.2 21 44 262 285 250 289 0.89 3 6 0.0003 3.5 8.2 0.2 21 44 290 313 286 318 0.89 4 6 0.0015 18 5.9 1.1 21 45 318 342 313 351 0.89 5 6 0.0056 65 4.1 0.1 20 45 373 398 364 403 0.84 6 6 0.65 7.5e+03 -2.5 0.0 27 48 406 427 402 428 0.79
Sequence Information
- Coding Sequence
- ATGGcgcttgatttttcaaaaatctgccGGGTTTGCCTAGGCGAAGGGGTCATGATGTCGTTGTTCAAAGTTAAtgtttcgaaaaaattaatgTCTTGCGCCTCGATACAGGTCTGGCAGAACGATAGACTGCCGTCCCAGATATGCAACAGGTGCAGCGCAAAGCTGCACATCGCGTTCCAGTTCAAAAAGCAGTGCCAAAAGTCGGACGCCACTCTGAGGCAGTATCTGGTCAATTCGGAAGCGCAAGGTAACAAAGTGCCCGAAGGGCAGATCGCAACCCAAAACGACGACGTCAACAAGCTACCGAACGTTCAAATCGGTAACCTGCCTGCTATTACGCAGGCGCCTTGTATTTTTATAGAGAACGCAAACGAGGCCCCAAGTGACATGCATTTCATGCACGTACCCCAAAACCACGCCGCGAATCAGGCGAATTTTATAATTTCCGGCCAGAGCGGCTTGCAACTGTCCAGTTACAATGTGCAAGGGGTGGGACAAATCGTTTACGACAATCAGTACGATGCGTCGGCGGTGCAGCAGCCCGCGGAAGTTCACGCGGAGATGTTGCCGGCCGAAGGTCCCCTCTCGAAACTAAACGATAGCTCGGGGCAGCAGAAAGGGGGGAAAACGTGCCCGACTTGCAACAAAACTTTCGGCACGTCCACCAAGTTGAGCCGCCACGTGAAGACCCATTCCGGGGACAAGCCTTACAAGTGCACAAGTTGCCCCAAACAGTTCACCCACAGCGGCAATTTCAAGATCCACATGCGGATGCATACGGGGGAGCGGCCTTTCAAGTGTCCCGTGTGCGATCGGGGGTGCAGGCAGGCGCAGGACCTAGAAAAACACATGCGTACCCATAcagGCGAGAGGCCTCACAAGTGTCCGATATGTCCCAAGGCCTTCTCGACCAGTTCCAATCTGATCGCTCACATCAGAACGCACACGGGAGAGAGACCGTACGTCTGTTGCGTGTGTCAAAAGGCGTTCTGCCAGTCCAACGAGCTCACTAAACACATGAGAACTCACACGGGGGAGAAGTCTCACATTTGCGACGTCTGCCACAGAGGTTTCAATGGATCGAGCACCCTCATAGTGCACAAGCGGTCGCACACCGGCGAACGGCCGTACGTTTGCAAGGTGTGCGACAAGGGATTCACGCAGTCGAGTTGTCTCGCGGTTCACCTCAGGAAACACAAAAACGTCATGTGTTGCGCGCACTGCAAGAGTCACTTTACGGACGAGAGCGAGTTTAGGGAACACCTCGTCGAGCGGCACCGTTTGAGCGACTCGGACGCGTACGACGTCTTCCGGCACGTGACGGACCGCAGCGAGCACGCGTGCAACCTGTGTTCCCAGAAGTTCACCAAAGCGAGCGAGTACAAAAAACACCTTTCTCAACATTTGAACCTCCAAGAGGCTtag
- Protein Sequence
- MALDFSKICRVCLGEGVMMSLFKVNVSKKLMSCASIQVWQNDRLPSQICNRCSAKLHIAFQFKKQCQKSDATLRQYLVNSEAQGNKVPEGQIATQNDDVNKLPNVQIGNLPAITQAPCIFIENANEAPSDMHFMHVPQNHAANQANFIISGQSGLQLSSYNVQGVGQIVYDNQYDASAVQQPAEVHAEMLPAEGPLSKLNDSSGQQKGGKTCPTCNKTFGTSTKLSRHVKTHSGDKPYKCTSCPKQFTHSGNFKIHMRMHTGERPFKCPVCDRGCRQAQDLEKHMRTHTGERPHKCPICPKAFSTSSNLIAHIRTHTGERPYVCCVCQKAFCQSNELTKHMRTHTGEKSHICDVCHRGFNGSSTLIVHKRSHTGERPYVCKVCDKGFTQSSCLAVHLRKHKNVMCCAHCKSHFTDESEFREHLVERHRLSDSDAYDVFRHVTDRSEHACNLCSQKFTKASEYKKHLSQHLNLQEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00413736;
- 90% Identity
- iTF_00413736;
- 80% Identity
- iTF_00413736;