Basic Information

Insect: Cylas formicarius
Gene Symbol: Ubtf
Assembly: GCA_029955315.1
Location: JARGXY010000011.1:9010368-9013230[+]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 3.8e-19 2.5e-16 60.2 5.6 1 68 313 380 313 381 0.98

2 4 0.00013 0.089 13.6 4.7 1 68 413 478 413 479 0.85

3 4 3.6e-06 0.0024 18.6 0.2 2 65 512 573 511 576 0.88

4 4 0.00019 0.13 13.1 3.0 34 66 642 674 640 676 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	3.8e-19	2.5e-16	60.2	5.6	1	68	313	380	313	381	0.98
2	4	0.00013	0.089	13.6	4.7	1	68	413	478	413	479	0.85
3	4	3.6e-06	0.0024	18.6	0.2	2	65	512	573	511	576	0.88
4	4	0.00019	0.13	13.1	3.0	34	66	642	674	640	676	0.88

Sequence Information

Coding Sequence: ATGAAGCTCCTCCCAGACGCTGAGGAAAACAGTGAATTTGTGAGTGAAACTGTATTAAATCCAGAATCCCATGAAGAATCTCGGAAACCTAAAAAAAGAAAGGGTTTAGAAGCAATTGAAGCTGAaccaaagaagaaaaagaagaaaaaaaaagaaaatccagATGAGCAACAAAATGTACAATACATTGAGGATTTGAAAGAAAACAATAACCGGAACGCAGAAATATTATCAAAAGGgccaaaacacaaaattaaatcaAGTAGTCATGAGGATGTTACTTCATCGTCTTCATCGGAAGAAAAACATAAGAAAAGAGTAAATGATAATCTCCACAGTGCTTCAAAGAGTGAAGACAACAAAGATtcaaaaaagcgaaaaaaaaagaaaataatagaaTCCGATTTAGAGAAAGAAGAGGATAGAAATGAAATGAATCATTGGGAACTTTATGATGACCTTAATTTACCTAGAGAAACATCATATAAAGACGAGGATTCAGAGCATTATTTTGACAATGAAGAAGCAgaggaaaatgaaaattattttctaactgACTCACCCAAGGAAAAACTAGACCTTGAACATTTGGATCAGGAGAATTCAAAAAAAGaccacataaaaaataaaaaaagtcAAAAAGTGCAAATTCATTGGCCTACAGATGATCTTAGTGAATTGGTGCGTAGAATAGAATGTTGTATTCCGTTGGGTGATAATATGAGTTATAAAAGTCGACTTGCTAAGTTGGAATGGGAAAAAGTAccctttaaaaattataacctAGACGAGTGTCAAAAAGTTTGGGCGCaactagaaaaaaaagttagacACTACCGTCTTCTTATCGAAATTTTACAGGATGTTAAGCAAGTTATTTCACTACCTGAAAAATCGACACGTGGAGTTTTGAAACACAAAAAACATCCAGATATGCCTAAACGACCTCTTACATCCTACTTCCTGTACTACATACAAAAGAAGGACAAAATAATAAGGGAACACCCAGATATGGTTATGattgaTGTGAACCGTATAATTAGCGAACAGTATAAAAAATTGCCACCAGAAAAAAAGGCCAAATATGATAAATTAGCTGAACAAAATAAAGAGGAATACAAAAAACAGTTGGAGGAGTTCTATGCTACTCATCCTGAAGTGCCAAGACAAGTAAATCTCAAAAAAGGTAAAGAACAAAAGAAGTTGggaaaaattaaggaaaaaccgACGAAGCCTCCAAAACGACCGGAAGCTCCATTTAAGCTGTTTTATCTGTCGGAGTATGATAGAGAACAAATAACTGATAGGGATAAGTCGGAGTTTAAGGAAATATGCAAAGAAAAGTGGAGGCACATGTCTGACAAAAAGAAGATGTACTGGATCAACTTCGCAGAGGATAGATTTTTAGAATACCAAGTGGCCATGAAAGAATATGTCGCGAAGCATCCGGAATATGTGCATAACGCTCCCGTAAAGCATTTTTTATCCAAGGAAGAATTGGCCCTAAAGGAAAGAGTCGCGGGGAAACCACGAAAACCTCCCAGTTCCGCTTACGGACTCTTTGTTAGTGAAATGTTGCAAACTGCCCAAATCAAAGCTATTCCTGTACGGGAAAGATTAAATTATGTTTCTTCCAAGTGGAAAGATTGTTCCGCTACTGAAAAAGAACACTATAAAGAGTTGGTATCCAAATTGAATGATGAATATCAAACTGCGTTCCTTGCTTACATAGATACTCTACCGGAAGACAAACGACAAGGCGAACTGTTGCTTAACCTaccgaagaagaagaaaagtgATAGTGAAGCGAGCAATTCGAAGAAACGCGCAAAAACAGAAGCGCGGGAAGAAAAGTTTGAGGAACCAGAACAACCGCCAAGgtctttgtttaaatatttcgcGAAGCAATATACGGGATCGGAAGCGGTTACGGAAGCATGGAAAAACATTTCAGCCGAGCAAAaggcaaattacaaaaaagagtTGACCGAGAAGAAGCAACATTATATAACTgagtttgaaaaatttttgaagagtcTTACTAAGGAAGAACTAGAGGAGTTCTCGAGGACGAGAAAGCAGATCGTCGAAGATAGCGATGAAGATGACCCGGACAGCGTCGAAGAAGAGGATTCTGATGACAGTTTTGATGACTCCGAGGGTTCTGATGATTCCGAAGGTTAA
Protein Sequence: MKLLPDAEENSEFVSETVLNPESHEESRKPKKRKGLEAIEAEPKKKKKKKKENPDEQQNVQYIEDLKENNNRNAEILSKGPKHKIKSSSHEDVTSSSSSEEKHKKRVNDNLHSASKSEDNKDSKKRKKKKIIESDLEKEEDRNEMNHWELYDDLNLPRETSYKDEDSEHYFDNEEAEENENYFLTDSPKEKLDLEHLDQENSKKDHIKNKKSQKVQIHWPTDDLSELVRRIECCIPLGDNMSYKSRLAKLEWEKVPFKNYNLDECQKVWAQLEKKVRHYRLLIEILQDVKQVISLPEKSTRGVLKHKKHPDMPKRPLTSYFLYYIQKKDKIIREHPDMVMIDVNRIISEQYKKLPPEKKAKYDKLAEQNKEEYKKQLEEFYATHPEVPRQVNLKKGKEQKKLGKIKEKPTKPPKRPEAPFKLFYLSEYDREQITDRDKSEFKEICKEKWRHMSDKKKMYWINFAEDRFLEYQVAMKEYVAKHPEYVHNAPVKHFLSKEELALKERVAGKPRKPPSSAYGLFVSEMLQTAQIKAIPVRERLNYVSSKWKDCSATEKEHYKELVSKLNDEYQTAFLAYIDTLPEDKRQGELLLNLPKKKKSDSEASNSKKRAKTEAREEKFEEPEQPPRSLFKYFAKQYTGSEAVTEAWKNISAEQKANYKKELTEKKQHYITEFEKFLKSLTKEELEEFSRTRKQIVEDSDEDDPDSVEEEDSDDSFDDSEGSDDSEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -