Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387698.1:3644366-3647259[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0012 0.076 14.1 0.8 1 23 278 300 278 300 0.97

2 12 1.1 71 4.7 0.2 5 14 368 377 366 381 0.86

3 12 0.00043 0.027 15.5 2.9 1 23 395 418 395 418 0.98

4 12 0.00023 0.014 16.4 0.6 1 23 423 445 423 445 0.98

5 12 4 2.5e+02 3.0 4.1 2 23 467 489 466 489 0.88

6 12 0.0083 0.52 11.5 1.9 1 23 493 516 493 516 0.97

7 12 0.024 1.5 10.0 0.5 2 23 539 561 538 561 0.94

8 12 4e-06 0.00025 21.9 2.7 1 23 571 593 571 594 0.96

9 12 0.0048 0.3 12.2 1.4 2 23 610 631 609 631 0.96

10 12 0.035 2.2 9.5 0.6 1 23 637 659 637 659 0.96

11 12 0.58 36 5.7 2.7 1 22 665 686 665 689 0.90

12 12 0.0031 0.19 12.8 0.2 2 23 734 755 734 755 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0012	0.076	14.1	0.8	1	23	278	300	278	300	0.97
2	12	1.1	71	4.7	0.2	5	14	368	377	366	381	0.86
3	12	0.00043	0.027	15.5	2.9	1	23	395	418	395	418	0.98
4	12	0.00023	0.014	16.4	0.6	1	23	423	445	423	445	0.98
5	12	4	2.5e+02	3.0	4.1	2	23	467	489	466	489	0.88
6	12	0.0083	0.52	11.5	1.9	1	23	493	516	493	516	0.97
7	12	0.024	1.5	10.0	0.5	2	23	539	561	538	561	0.94
8	12	4e-06	0.00025	21.9	2.7	1	23	571	593	571	594	0.96
9	12	0.0048	0.3	12.2	1.4	2	23	610	631	609	631	0.96
10	12	0.035	2.2	9.5	0.6	1	23	637	659	637	659	0.96
11	12	0.58	36	5.7	2.7	1	22	665	686	665	689	0.90
12	12	0.0031	0.19	12.8	0.2	2	23	734	755	734	755	0.97

Sequence Information

Coding Sequence: ATGGAAGACTCAATGGCCTTAGAAAATACCCTCCAAACAGACTCAAACTACCAACTAACAGATAGTGTAACAATTAAAGAGGAGTTGGACAATAACATAGTTATAGAAGAACACAATGTAGAACTACAATTAAAAACTGAAAAAGAAGATCCCTATCAAAATATCGAACTAGAAGTAAAGCAAGAACCAGAACCAGTTAATTTCAGGAAATATATAGAGAGTAAGATATTAGAAGAGTTTAAAGTACAAAGTGAAGTCGATTCAATATTGCCTATAATAGATCCAGAAGAAGAAGAAAAGGTGAAACAGGAATGTTTGGCAGATGATGCCATGATTTCATATGATTTCCCGAATTTTGATGATGGGAGTGTCGGGGCTCGAAGTATGGAGACTGGGAGTATGGATAGCAATGATGCGGCAGCTCTTGGGAATGTGGAAGCGTGTCTGCAGGAGGATGGGGTCAGTGTTAAATACGAGAATGATGAATATGATGACCCTCACTTGAGCGTGAAAGAAGAAAGAGACTTGACAGTAACAGAAACACATCTAATCTCAAATAAAGTGATCAACACAACATCAACCATCACCAACCCGCAGGACGGGCTCATAGAGTCACAAACCACGAAAACGCTAGTCATGGAAATACACCCCATGTCACATAGTGGCAGTGTCCCACTATCTAAGATAGGGAATCCGGAAGAAATCCTACCCAACGACATAGAATATGATGACTTCCAATTAAACTCTATCACAGGAAATGAATTAACGCTAGAGCAAGAGGCTTATGGACTTTTAAAGGCAAAGAAGAAAAAGATAGATCCAGAAAAGACACATCAATGTCCTAAGTGTGTGAACATGTACCGTAGTGCAGCGTCTCTTAAAAACCATTTGTCAGTCCATGCTAGTATAGAGAACCGAGCTAAAGGTGTCATTCAAGGGCAGAAAACTAGACGTTTAAACAGATTAAAAGCGGAAAAACAATACAGAATTGAACTTAAAAAAGAGATGAAGCAGCGGGAACAATATCTTAAGACTAAGATAGAAAAGAAAAAAATGAAAAAGAAACCTGCAGAACCAGTTAAGAAAGAAGGCTATGAATGCACTTGCGGAAAGGTGTTCAGAAGAAGAAGCCGCATGGAAACTTGTTTAAGATCACATAACTTGTTTGCTGAAGAAAAAACATACCCTTGCCATACATGTGCAAAGAATTTCAAGGGCAAAGAAGAACTAACGCTACATAGGAGACGATTCCACACTAAGAAGAAATTCCCATGTAAATTTTGCCCCACAGATTACAACACGCCTAAAGAGCTATTCAAGCATTTACAAATACACCAGAAAGTTCAGCTAATGGAATACAAAGTCATTTCAGAGATTGTTAAAGGCAAAAAAAAGATGCGGTGCTTTATGTGTTCTAAAACTTGTACAGAACTTTCAGAGTTGAAGTGCCATGTCATGGATGACCATAAGGAGCCTTACATTTGTCAGCATTGCCAGCAAACATTTCCTAAAATAATAGATTTTGCCAATCACACAAAAACATCACATCCCGAGGTGGAAGGCCAATCAGTCTTAGATGTCCTAGAAGCGTTTTCAAAACTAGTACAAGCATGGAAATGTGAGGAATGTGAACTACAGTTCCACGAGGCAGACAAACTAGCGAGGCATCAGTTAGAGAAGCACAGTCGAGAAGTCAAATCGGAGCTACAATTCCAATGTACAGATTGTCAAAGAGTTTTCATCACACAAAAGGGTCTAACATCACATAGAAGGGTACATCACAGCACGGAAACACCCGAAGTCAGTGACATTATCGAACAGGGTATAATGTGTTTAGAATGTAGGAAAATTTGCAAAGATATGAATGCTTTAACATCACATATGAGGCTGCATTCTCCGGATAGAAGGTATCCATGCAAATTTTGCGAATTTCGCTTTGCAACTCCTGAAAAAAGGAAAACGCATGCTGAAATTCATACAGGTGATATGAAATATGTTTGTTTTATTTGTGAATATCAGTGTACATCGGAGAATAGGCTTAAACAACATAAATTATCAGCAAAGCATTCAAATATGAAAGAATATTTGCTAACGGGTAAAATTAATAATGAGTCAACATCTAAACAAGATGAAATCAAAGCGTCTCAAAGTAAAAGTGTGAAGAAAAAGAAGAAAGAAGATACAGAGGCGATAGAAGCGACATGTGAAGTGTGCGGGGAGAAGTTTCCTAGTGAAGAGACCATGTTGGAACATAAACAGACACATCCTTTTATCGAGTTTCCTAATGAGGATACGCCTAGTAGGATATTCTTTAAGTAG
Protein Sequence: MEDSMALENTLQTDSNYQLTDSVTIKEELDNNIVIEEHNVELQLKTEKEDPYQNIELEVKQEPEPVNFRKYIESKILEEFKVQSEVDSILPIIDPEEEEKVKQECLADDAMISYDFPNFDDGSVGARSMETGSMDSNDAAALGNVEACLQEDGVSVKYENDEYDDPHLSVKEERDLTVTETHLISNKVINTTSTITNPQDGLIESQTTKTLVMEIHPMSHSGSVPLSKIGNPEEILPNDIEYDDFQLNSITGNELTLEQEAYGLLKAKKKKIDPEKTHQCPKCVNMYRSAASLKNHLSVHASIENRAKGVIQGQKTRRLNRLKAEKQYRIELKKEMKQREQYLKTKIEKKKMKKKPAEPVKKEGYECTCGKVFRRRSRMETCLRSHNLFAEEKTYPCHTCAKNFKGKEELTLHRRRFHTKKKFPCKFCPTDYNTPKELFKHLQIHQKVQLMEYKVISEIVKGKKKMRCFMCSKTCTELSELKCHVMDDHKEPYICQHCQQTFPKIIDFANHTKTSHPEVEGQSVLDVLEAFSKLVQAWKCEECELQFHEADKLARHQLEKHSREVKSELQFQCTDCQRVFITQKGLTSHRRVHHSTETPEVSDIIEQGIMCLECRKICKDMNALTSHMRLHSPDRRYPCKFCEFRFATPEKRKTHAEIHTGDMKYVCFICEYQCTSENRLKQHKLSAKHSNMKEYLLTGKINNESTSKQDEIKASQSKSVKKKKKEDTEAIEATCEVCGEKFPSEETMLEHKQTHPFIEFPNEDTPSRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289988;
90% Identity: iTF_00409612; iTF_00410700; iTF_01134159;
80% Identity: -