Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750813.1:9007332-9010142[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0064 0.41 12.2 1.3 1 23 272 294 272 294 0.97

2 12 1.5 96 4.8 0.2 5 14 362 371 360 375 0.86

3 12 0.00011 0.0068 17.8 3.8 1 23 389 412 389 412 0.98

4 12 0.0003 0.019 16.4 0.6 1 23 417 439 417 439 0.98

5 12 0.02 1.3 10.6 2.0 2 23 460 482 459 482 0.93

6 12 0.0022 0.14 13.7 1.2 1 23 486 509 486 509 0.97

7 12 0.037 2.4 9.8 0.4 2 23 532 554 531 554 0.93

8 12 5.1e-06 0.00033 21.9 2.7 1 23 564 586 564 587 0.96

9 12 0.0062 0.4 12.2 1.4 2 23 603 624 602 624 0.96

10 12 0.013 0.83 11.2 0.6 1 23 630 652 630 652 0.96

11 12 0.75 48 5.7 2.7 1 22 658 679 658 682 0.90

12 12 0.004 0.26 12.8 0.2 2 23 727 748 727 748 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0064	0.41	12.2	1.3	1	23	272	294	272	294	0.97
2	12	1.5	96	4.8	0.2	5	14	362	371	360	375	0.86
3	12	0.00011	0.0068	17.8	3.8	1	23	389	412	389	412	0.98
4	12	0.0003	0.019	16.4	0.6	1	23	417	439	417	439	0.98
5	12	0.02	1.3	10.6	2.0	2	23	460	482	459	482	0.93
6	12	0.0022	0.14	13.7	1.2	1	23	486	509	486	509	0.97
7	12	0.037	2.4	9.8	0.4	2	23	532	554	531	554	0.93
8	12	5.1e-06	0.00033	21.9	2.7	1	23	564	586	564	587	0.96
9	12	0.0062	0.4	12.2	1.4	2	23	603	624	602	624	0.96
10	12	0.013	0.83	11.2	0.6	1	23	630	652	630	652	0.96
11	12	0.75	48	5.7	2.7	1	22	658	679	658	682	0.90
12	12	0.004	0.26	12.8	0.2	2	23	727	748	727	748	0.97

Sequence Information

Coding Sequence: ATGGCCTTAGAAAATACCCTCCAAACAGACTCAAACTACCAACTAACAGATAGTGTAACAATTAAGGAGGAGTTGGACAATAACATAGTTATAGAAGAACACAATGTAGAACTGCAATTAAAAACTGAAAAAGAAGATCCCTATCAAAATATACAACTAGAAGTGAAAGAAGAACCAGTTAATTTCAGgaaatatatagaaagtaagATATTAGAAGAGTTTAAAGTACAAAGTGAAGTAGATTCAATATTGCCTATAATAGAtccagaagaagaagaaaaggtGAAACAAGAATGTTTGGCAGATGATGCTATGATATCATATGACTTCCCGAATTTTGATGATGGGAGTGTCGGGGCTCGGAGCATGGAGACTGGGAGTATGGACAGCAATGATGCAGCCGCTCTTGGGAATGTGGAAACGTGTCTGCAAGAAGACGGGGTCAGTGTTAAATACGAGAATGATGAATATGATGACCCTCACTTAAGCGTGAAAGAAGAAAGGGACTTGACAGTAACAGAAACACATCTAATCTCAAATAAAGTGATCAACACAACATCAACCATCACCAACCCGCAGGACGGGCTCATAGAGTCACAGACTACCAAAACACTAGTCATGGAAATACACCCCATGTCACATAGTGGCAGTGTCCCTCTATCTAAGATAGGGAATCCGGAAGAAATCCTACCTAACGACATAGAATATGATGACTTCCAATTAAATTCTATCACAGGAAATGAATTAACGTTAGAACAAGAGGCTTACGGACTTTTAAAGGCAAAGAAGAAAAAGATAGATCCAGAAAAGACACATCAATGTCCTAAGTGTGTGAACATGTACCGCAGCACAGCGTCTCTTAGAAACCATTTGTCAGTGCATGCCAGTATAGAGAAACGAGCGAAAGGTGTCATTCAAGGGCAGAAAACTAGGCGTTTAAATAGATTAAAGGCAGAGAAACAATACAGGATAGAACTTAAGAAAGAGATGAAACAGCAGGAACAATATCTCAAGCCTAAGatagaaaagaaaaaaatgaaaaagaaCCCTGCAGAACCAGTTAAGAAGGAAGGCTATGAATGCACTTGTGGCAAAGTATTCAGAAGAAGAAGCCGCATGGAAACTTGTTTAAGATCGCATAACTTGTTTGCTGAAGAAAAAACATACCCTTGCCATACATGTGCAaagaattttaaaaacaaagaagAACTGACGCTACATAGAAGACGGTTCCACACTAAGAAGAAAttcccatgtaaattttgcccCACGGACTACAACACGCCTAAAGAGCTCTTCAAGCATTTACAAATACACCAGAAAGTTCAGCTAATGGAATATAAAGTTATTTCAGAGATTGTTAAAGGCAAAAAGATGAGGTGTTTTATGTGTTCTAAAACGTGTACAGAACTTTCAGAGTTGAAGTCCCATGTCATGGACGACCACAAGGAGCCTTACATTTGTCCGCATTGCCAGCAAACATTCCCTAAAATAATAGATTTTGCCAACCACACAAAAACATCACATCCTGAGGTAGAAGGCCAGTCAGTCTTAGATGTCCTAGAAGCGTTTTCAAAACTAGTACAAGCATGGAAGTGTGAGGAATGTGAACTGCAGTTCCACGAGGCGGATAAATTAGCGAGGCATCAGATAGAGAAGCACAGTCGGGAAGCCAAATCGGAGCTACAATTCCAGTGTACAGATTGTCAAAGAGTTTTCATCACACAGAAAGGTCTAACATCACATAGAAGAGTACATCACAGCACAGAAACGCCCGAAATCAGTGACATTATCGAAAAGGGTATAATGTGTTTAGAATGTAGGAAGATATGCAAAGATATGAACGCTTTAACATCACACATGAGGCTACATTCTCCGGATAGAAGGTATCCATGCAAATTTTGCGATTTTCGTTTCGCAACTCCTGAAAAGAGGAAAACGCATGCTGAAATTCATACAGGTGATATGAaatatgtttgttttatttgtgaATATCAATGTACATCGGAGAATAGGCTTAAACAGCATAAATTATCAGCGAAGCATTCAAATATGAAGGAATACTTATTAACcggtaaaataaataacgaatCAACACCTAAGCAAGATGAAATCAAAGCGTCTCAAAGTAAAAGTGTTAAGAAAAAGAAGGCAGAAGGTACAGAGGAGATAGAAGCGACATGTGAAGTGTGCGGTGAGAAGTTCCCTAGTGAAGAGACCATGTTGGAACATAAACAGACACATCCCTTTATCGAGTTTCCTAATGAAGATACGCCTAGTAGGATATTTTTCAAGTAG
Protein Sequence: MALENTLQTDSNYQLTDSVTIKEELDNNIVIEEHNVELQLKTEKEDPYQNIQLEVKEEPVNFRKYIESKILEEFKVQSEVDSILPIIDPEEEEKVKQECLADDAMISYDFPNFDDGSVGARSMETGSMDSNDAAALGNVETCLQEDGVSVKYENDEYDDPHLSVKEERDLTVTETHLISNKVINTTSTITNPQDGLIESQTTKTLVMEIHPMSHSGSVPLSKIGNPEEILPNDIEYDDFQLNSITGNELTLEQEAYGLLKAKKKKIDPEKTHQCPKCVNMYRSTASLRNHLSVHASIEKRAKGVIQGQKTRRLNRLKAEKQYRIELKKEMKQQEQYLKPKIEKKKMKKNPAEPVKKEGYECTCGKVFRRRSRMETCLRSHNLFAEEKTYPCHTCAKNFKNKEELTLHRRRFHTKKKFPCKFCPTDYNTPKELFKHLQIHQKVQLMEYKVISEIVKGKKMRCFMCSKTCTELSELKSHVMDDHKEPYICPHCQQTFPKIIDFANHTKTSHPEVEGQSVLDVLEAFSKLVQAWKCEECELQFHEADKLARHQIEKHSREAKSELQFQCTDCQRVFITQKGLTSHRRVHHSTETPEISDIIEKGIMCLECRKICKDMNALTSHMRLHSPDRRYPCKFCDFRFATPEKRKTHAEIHTGDMKYVCFICEYQCTSENRLKQHKLSAKHSNMKEYLLTGKINNESTPKQDEIKASQSKSVKKKKAEGTEEIEATCEVCGEKFPSEETMLEHKQTHPFIEFPNEDTPSRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00289988;
90% Identity: iTF_00412901;
80% Identity: -