Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387700.1:4789262-4827670[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.17 10 7.4 0.0 2 23 495 516 494 516 0.93

2 15 0.073 4.5 8.5 0.1 1 23 526 549 526 549 0.95

3 15 0.26 16 6.8 4.0 2 23 675 696 674 696 0.95

4 15 1.9e-05 0.0012 19.8 1.0 1 23 738 762 738 762 0.99

5 15 0.052 3.2 9.0 0.2 1 23 768 790 768 790 0.93

6 15 0.0034 0.21 12.7 3.4 1 23 796 818 796 818 0.98

7 15 0.25 15 6.8 0.4 1 23 925 947 925 947 0.97

8 15 2.9 1.8e+02 3.5 7.2 1 23 954 976 954 976 0.95

9 15 0.0019 0.12 13.5 1.8 1 23 1015 1038 1015 1038 0.95

10 15 0.13 8.3 7.7 1.1 1 23 1045 1068 1045 1068 0.97

11 15 0.0054 0.33 12.1 0.2 2 23 1089 1111 1088 1111 0.96

12 15 0.16 9.8 7.5 1.3 3 23 1137 1157 1136 1157 0.85

13 15 5.6e-05 0.0035 18.3 2.2 1 23 1169 1191 1169 1191 0.97

14 15 0.00027 0.017 16.1 0.1 1 23 1197 1219 1197 1219 0.97

15 15 0.022 1.3 10.2 1.5 3 23 1227 1248 1227 1248 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.17	10	7.4	0.0	2	23	495	516	494	516	0.93
2	15	0.073	4.5	8.5	0.1	1	23	526	549	526	549	0.95
3	15	0.26	16	6.8	4.0	2	23	675	696	674	696	0.95
4	15	1.9e-05	0.0012	19.8	1.0	1	23	738	762	738	762	0.99
5	15	0.052	3.2	9.0	0.2	1	23	768	790	768	790	0.93
6	15	0.0034	0.21	12.7	3.4	1	23	796	818	796	818	0.98
7	15	0.25	15	6.8	0.4	1	23	925	947	925	947	0.97
8	15	2.9	1.8e+02	3.5	7.2	1	23	954	976	954	976	0.95
9	15	0.0019	0.12	13.5	1.8	1	23	1015	1038	1015	1038	0.95
10	15	0.13	8.3	7.7	1.1	1	23	1045	1068	1045	1068	0.97
11	15	0.0054	0.33	12.1	0.2	2	23	1089	1111	1088	1111	0.96
12	15	0.16	9.8	7.5	1.3	3	23	1137	1157	1136	1157	0.85
13	15	5.6e-05	0.0035	18.3	2.2	1	23	1169	1191	1169	1191	0.97
14	15	0.00027	0.017	16.1	0.1	1	23	1197	1219	1197	1219	0.97
15	15	0.022	1.3	10.2	1.5	3	23	1227	1248	1227	1248	0.95

Sequence Information

Coding Sequence: ATGACGGAGGAGCAGCCTCCACTGATGCTCTGTCTAGAGAATGCTGCCGGTGAGGAGGTGTCGCTCAACATTGAGCCAAATGATGACTTTCACTCCTTCCTGATAAAGGCAAATGCACTACTTGGATACGAAGTAGACCTAAATTCATTAACCAGAAACAAGCCAGTGGCCTTAACAGACAACATTTACCAATTCCTGCTAAATTCTGAAAACGGCCTCCTTGAGTACCCTATGCCACAAACATTTGATCAAATGTTAGAACCAAATGATACTACAGATGGCTTAGTGTATGTCCTAGGCGATGGAACACAAATCAAAGCTTCACAGATTCATTTTGACAATGAGGATCCACTTTTTGATTTTGTAGCAGAAAAAATACCATTTGTCAAATACGTTGATGATTATATAGATGAGGTTGAACCATTAAAAGAAATTAGCACGAAAATGATCAACATAGTCGCTAGCCCTGTCTCTAAATGGCCTAGTACTTCAAGCCCAAAGAAACCTTTCATTAACAGCATTCCTTTTAAACTGGTTAACAATAATGCTTCAGGTTTTGCAGCTCAATTCCATAAATTCGTAGAATCTAGTATTGATAAAACTTTTACGCCGCTTAATCCAGTTACAACTAGAAATAAGTCTCCGAGAAGTCTTATTAGAGACAACTATAATAAATATGAGGACAATATTTATAATAAAAATGATTTCATAACACGAGATGAAGTTTTAAATATGTTTAAAGATACTCCGGTAGTACCTTATGAGAGCCAAAACTTCAGTGATAAAAGGAGACGCAAAACTGACCCTTCACGCCCTATTAATAAGACTGCGAATGCTAAAACAATGCCGTACATAGATGTTGATGGTACTTTAATAGGTCAAAATGAGAGCCAAAACTGTTTCATTTGTGAGAAATTTGTCAATAACAATATGGATAAGCTTTATTTATTTGACAATGAAGATCAGAAACTACACAGATCATCTCCGCAAAAGAAATTATCCACTCAATTGAAAATTATCTGTGAACAATGCTTAGACAATAATTTTAAACCATCTAGATTAAAAAGCCCCAGCAAAAATCTAAATCCAGACGAATATTTGGTCATTAGGAACAATCAGCAGTATATATTTCAGAAAACGAATTCTATAGATTTTAAAAATATAAAAAGCAGTTTCGTAAACATTGGTGAAGCAACAGCTATAATAGACAAGATAGAAACAGAAATCTTTAAAGGAAATCAAGTGAATCAAACTGATTTTGTTAAAGTTGAAATCGATTCAAATGGAGAAATTATATCGAAAGATGATGCGGTAGAATCAAATTCGGAATTATATATTATTAAAGATAGAAGCTCTAGTGATGTTGAAATAATCGAGGGACCGGAAATAGACGATGTCTTAGACAATTTAGAGGAAGCAGATGAGGAAGTAAAGGAGTTTTTAGGGATGTATCAGAGTGACATTAATGATACTAGTGAACTAAAATGCAGGTTTTGCGAGCGCGTCTTTGCAGAGTTAGCCGAGTTGATGGAACATGGTGACGTTCACAAACACGTGACGGAAGATGGCGAGGTGTACCCGTGCCCTTTGTGTTTTTACGGATACGCCAATTTTAAATGGCTCAAAGGCCATCTTAAAGCAGCCCACGATAAACCTAAGAAGCCTCCAGCAGAAAGCAATAACGACGATGCAAAGGATGAATTAGAATCGCAAACACCGTCTGAGCAGTCTCCAGTGGCCAAAAGAACTAGAAGTAACGATAAGAAAAATAACGAGGCTGATAAAGATGAGACAGCAAAGTCAGAGAAAGAACCTGCAAAATCAGTGGAACCTGAAAATGATAACCAGGAATGCAAAATGGAAATTAAGTTAGAAATAAAGCAAGAAGCATTAGATACAAGCGACGAAGAAGCGATATGGATCGTGCATACTGACGATACGCCGGCCGACCAGCTACACTCGCTTCTGCATAGGCCTCGTAAGAAGAAAGCCACAGAACCGACCTCAGATCCTCAGATCATGACGTGTCATAATTGTAACGAGTCCTACACATCCAAAGTACGATTGAAGTTTCACATGCAATTCCACGACAACACAGAGATGCTGAACGCCAACGGGCAGTACAGTTGTCTCGAGTGCCCCGGAGTCACTTTCATGACAGAGACAGAGCTATTTGACCATGTACACTTTCAACATGACAAGCAGAATCGCTATCAATGTCCTGTCAAGGATTGTGGGAAGACATTCTTTCTCAGAGCGTCTCTGACGAAACATAGCCGCACGCACACAGACACACGCCGCTACGTTTGCGGCACTTGCGGCAAGAGATTCCTGGACAAACAGACTTTGGATGAACATGGAGTCACACATTTGCAGATCAAACCATACCAATGCCATATTTGCATGAAGCAACTCACTCGCCGCTCTCGCTTGCGCATGCACATGCGCGCGCACGAGGAGTCTCTCTGTCCCGCTCTAGTGCCCGTCTGCGCCGCCTGCCGCCGCGCCTTCCAAAACGTTCCCGCCGCTGTGGAGCATGTGAAGAAGTCACCAGAGTGTCTCGGGACATACGGTTGCGATTTGAACGAAGATGAGAAACCTGCCGCCGTGTTATCACCCACAAGTGGGCTAGTTCGACCCACACAGGAAGAACCACCGGGTCAACAGTTTTGCATAGAACGCGAAGCCCAATGCGCCGGCGCCGCCGCGCTTTTGGCGCCACTTCCGACGTCCTTGCGCGCCGTCGTTCGTGCAGTCAAAGTAGATAAGGCCTTCCGCTGCGAGTTTTGCGAGGACGTGTTTTACTTGGAGGAGGATTTGAACAACCACCGAACTATCCATAAAGGGGTGAAGAACCCTTTCACTTGCCACATCTGCAAAGTCAGCTTCGCTACTTATTCTAGATGTACAACACACAAAACTACCCACGGCTTTTACAAGCGCCCCTTAGCTGATGTGAAGAACGAGGGGCCAAGCCGAGCAAATTCCGGTCCGTCTGCGCGCGGCGTGTTAGGCTACGGAGGGTTTCCTGTCGTGAAACATTTCCTGTGTGAGGACTGTGGACGATCATATCTACACTGGACGTACTTGCAAGTGCATCGAAGAATGAAACACGCGAACGAGAATTTCATCTACAAGTGCATACATTGCGAGGAGACCTTCCCTAACAGTTGGAGCGTGGCCTACCACAGAAAAAAGGTGCACGGCAAACCGGCAGAAAAGGGGAACGGAGCCACGAAAACTGTCCACACCGACTATAGAATCCCATGCCGAGACTGCGACGAAGTTTTGCCAAACAAAACTGCGCTCTATAAACATAGGAAGAAGGAGCACAGTTACGTGTCATTACCAATTAATGATAATCAAGGTGTGAGTGGGCAGGCGCACGCAGACGGCGCGCGAGCAGCCTGCACGCACTGCGGTCTCAGCTTTCCCGCCAACCTGCTGTCACACCATCTCAAAGAGGTCCATGGGCAAGATACGCAGTATCCGGCCACACGATCACACACCTGCACCGTCTGTGGACACGCCTTCCGCACGGCATCCATGCTTACTGAGCACTCCAGGATCCACACCGGTGAACGGCCGTTTCCGTGCGACGTGTGTGGGGTAGCTTTTAGAAGAGCAACGGCGATGCGTAACCACCGTTTGATCCACACGGGCGTCCGAGCGTGGGGCTGCGCGCGCTGCCCGAAGCGTTTCCGGATCCGCTCCGACCTCAACACGCACTCGAGACTCAAGCACCCGCTACATCTAGCTGTCATAGAGGTGTCGGGCCTGGATCCCAGCTCGGAGCAGGTGATGGACGCGCTCGCCTTGAACAATATCGCCCGGGAGAGTGTTCTTGAAATCACTAAGGTTTCCTTCCCCAAGGGCGCGCGGCACGTGGTGCCGGACAGCGCGCGCGCGCTCGCGCTGCTGGACGCGGCGCGCCGGCCCGTGCGCTGGACGAGACCTGCGCGTGCGCACGCGCCTGCACCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCTGCGCCGGACAACCACCACACCAACTACGCTGCTGCGGAAATGCCGTACATGCCGTACGCACGGCGCGGTCGCGGCATCGCCAGGAGCACCCGCTATGACGGAGCACCGTCACAAGTACAGGACCTGACAGGTTTGAACGTGGAGATGCTTCTCCAAGACAACCTGCTCGAGCAATCTTCACTCGGTCCTCAACAAATGCTCGACCCCATGCTCCTGTTTAATACTCCGCCACAGCAGATGCAGACTGACGTCATCGTCAACCATTAA
Protein Sequence: MTEEQPPLMLCLENAAGEEVSLNIEPNDDFHSFLIKANALLGYEVDLNSLTRNKPVALTDNIYQFLLNSENGLLEYPMPQTFDQMLEPNDTTDGLVYVLGDGTQIKASQIHFDNEDPLFDFVAEKIPFVKYVDDYIDEVEPLKEISTKMINIVASPVSKWPSTSSPKKPFINSIPFKLVNNNASGFAAQFHKFVESSIDKTFTPLNPVTTRNKSPRSLIRDNYNKYEDNIYNKNDFITRDEVLNMFKDTPVVPYESQNFSDKRRRKTDPSRPINKTANAKTMPYIDVDGTLIGQNESQNCFICEKFVNNNMDKLYLFDNEDQKLHRSSPQKKLSTQLKIICEQCLDNNFKPSRLKSPSKNLNPDEYLVIRNNQQYIFQKTNSIDFKNIKSSFVNIGEATAIIDKIETEIFKGNQVNQTDFVKVEIDSNGEIISKDDAVESNSELYIIKDRSSSDVEIIEGPEIDDVLDNLEEADEEVKEFLGMYQSDINDTSELKCRFCERVFAELAELMEHGDVHKHVTEDGEVYPCPLCFYGYANFKWLKGHLKAAHDKPKKPPAESNNDDAKDELESQTPSEQSPVAKRTRSNDKKNNEADKDETAKSEKEPAKSVEPENDNQECKMEIKLEIKQEALDTSDEEAIWIVHTDDTPADQLHSLLHRPRKKKATEPTSDPQIMTCHNCNESYTSKVRLKFHMQFHDNTEMLNANGQYSCLECPGVTFMTETELFDHVHFQHDKQNRYQCPVKDCGKTFFLRASLTKHSRTHTDTRRYVCGTCGKRFLDKQTLDEHGVTHLQIKPYQCHICMKQLTRRSRLRMHMRAHEESLCPALVPVCAACRRAFQNVPAAVEHVKKSPECLGTYGCDLNEDEKPAAVLSPTSGLVRPTQEEPPGQQFCIEREAQCAGAAALLAPLPTSLRAVVRAVKVDKAFRCEFCEDVFYLEEDLNNHRTIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRPLADVKNEGPSRANSGPSARGVLGYGGFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFIYKCIHCEETFPNSWSVAYHRKKVHGKPAEKGNGATKTVHTDYRIPCRDCDEVLPNKTALYKHRKKEHSYVSLPINDNQGVSGQAHADGARAACTHCGLSFPANLLSHHLKEVHGQDTQYPATRSHTCTVCGHAFRTASMLTEHSRIHTGERPFPCDVCGVAFRRATAMRNHRLIHTGVRAWGCARCPKRFRIRSDLNTHSRLKHPLHLAVIEVSGLDPSSEQVMDALALNNIARESVLEITKVSFPKGARHVVPDSARALALLDAARRPVRWTRPARAHAPAPAPAPAPAPAPAPDNHHTNYAAAEMPYMPYARRGRGIARSTRYDGAPSQVQDLTGLNVEMLLQDNLLEQSSLGPQQMLDPMLLFNTPPQQMQTDVIVNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00410723;
90% Identity: -
80% Identity: -