Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387699.1:1423318-1428827[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 6.2e-05 0.0038 18.2 1.6 1 23 178 200 178 200 0.98

2 12 0.25 15 6.8 3.2 1 23 206 228 206 228 0.88

3 12 0.00029 0.018 16.1 6.4 1 23 234 256 234 256 0.99

4 12 0.00019 0.012 16.6 1.5 1 23 262 284 262 284 0.96

5 12 0.00078 0.048 14.7 4.1 1 23 292 314 292 314 0.98

6 12 7.8e-05 0.0048 17.9 1.5 1 23 320 342 320 342 0.97

7 12 2.8e-06 0.00017 22.4 0.4 3 23 350 370 349 370 0.97

8 12 3.3e-06 0.0002 22.2 2.1 1 23 376 398 376 398 0.98

9 12 0.018 1.1 10.4 2.5 1 23 404 426 404 426 0.98

10 12 0.043 2.6 9.2 0.3 1 23 432 454 432 454 0.93

11 12 4.5e-05 0.0028 18.6 0.9 2 23 461 482 460 482 0.97

12 12 5.1e-07 3.2e-05 24.7 2.5 1 23 485 507 485 507 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	6.2e-05	0.0038	18.2	1.6	1	23	178	200	178	200	0.98
2	12	0.25	15	6.8	3.2	1	23	206	228	206	228	0.88
3	12	0.00029	0.018	16.1	6.4	1	23	234	256	234	256	0.99
4	12	0.00019	0.012	16.6	1.5	1	23	262	284	262	284	0.96
5	12	0.00078	0.048	14.7	4.1	1	23	292	314	292	314	0.98
6	12	7.8e-05	0.0048	17.9	1.5	1	23	320	342	320	342	0.97
7	12	2.8e-06	0.00017	22.4	0.4	3	23	350	370	349	370	0.97
8	12	3.3e-06	0.0002	22.2	2.1	1	23	376	398	376	398	0.98
9	12	0.018	1.1	10.4	2.5	1	23	404	426	404	426	0.98
10	12	0.043	2.6	9.2	0.3	1	23	432	454	432	454	0.93
11	12	4.5e-05	0.0028	18.6	0.9	2	23	461	482	460	482	0.97
12	12	5.1e-07	3.2e-05	24.7	2.5	1	23	485	507	485	507	0.99

Sequence Information

Coding Sequence: ATGTCTGAAAAGGAAACAGAGCCAATAGACGACGAAACGAGGGTAGAAACAGTAATAGTTAAGAATGAGTTAGACTGTACTGAAGAAAAAGGTCAGGAAAAATTTAAAGATATTGCTGTAGAAAAGGGGAGGGGGGGAAAATCATCAGATATGGAGGTGAAGATGGAGATAGTGTGTGTAAAGGAGGAACCACACTGGGACGGAGAAAGCGAGGCGGCTGAACAAGCGGGCTTGGACAGCGACCTCAACGTTGAAGAGGACGGTGTGCTTGGAACAGGATCTGTGCAGGAACCTGGAGCAGCATTTgtgaatgTTGCACTCGAAGAAAACACATGCAAAAAAGAGGCAGTTGAAGAATTCATTGTGCCAGATCAATTAGGGTGCTCCACTTGGGGCTCCACAGATAACAGCATGTTACTACAGATAACCAGACTCTCTACTTCCATGCACGAAGGAACTCTTTTCAGAAGGAGGTTCAAGGAAAGAAAGAAAAAAGGAAAAGTTAACACTGATCTCGAAGAGACTGGAAAATATCAATGTGATCTATGCAACAAGAAGTTTACAGTAAAAAAGTATTTGATTGGACATCTTAACTATCACAAGTATAAAAAACCGTTTCATTGCGGTATTTGTAACAAAACGTTTTCGTGTGAGACTTACGCGTCTGCGCACGAGAGGATTCACACTGGCGAGAAACCATACAGTTGCAAACTCTGCAATAAAGCGTTCAGGTGCTCTAGCCATCTGATTAAGCATGAAAGAACTCACACAGAAGACAAGCCGTTCTCATGTGAAATTTGTAAGAAGCAATTTAGAGAAAAAACCCAACTGAAGCTGCATGAGCTTTTACACAAAGGGGAAGAGGCGAAACAGTATTCGTGCAAGTTTTGTCCAAAGAAGTTCATACACATGTATAAGCTGACGATTCACGAGCGAAACCACACTGGGGTTAGACCGTTTGAATGTAAAACGTGCGGGCAGAGCTTTGTCCAAAAGTTCCAACTAGACAGTCATAACAGATTACACACCGGTGACAAGCCGCGTATATGCGAAATTTGCGGCAAGCATTTTATAACAAAGGCGGACTTAGTGAGACACGAGCGCATACACACTGGAACCAAGCCGTACAGCTGCGATTTATGCCAGCGGCAGTTCTCCCAAAAAGCGCATTTAAACTCTCACATGTTAGTTCACAGTGGGGATAAACCCTACTCGTGCGAAACATGCTCAAAGAAGTTCAGCTGCAAACCCTCATTGGTTATTCACTCCCGAGTGCACACGAACGAGAGACCGTACGCTTGCAGGGTATGCGGGAGGCAATTCAAACAGGGTGGCGTCAGGAGGAGGCACGAAGCGACTCACACGCGAGACAAAACCATTGTCTGTGAAGTATGTAACGAACATTTCGCCCTCAAAAGGGAGCTGAAGAAACACCAAAGAGTGCACTTGGTGTACACTTGTGATATATGCAATAAGGAGTTTAGGGATAAATTCAATTTTAATAGACATGTGCAGACGCATAGTGAACAAGCGGAGGAAAACGAGGAAAACTAA
Protein Sequence: MSEKETEPIDDETRVETVIVKNELDCTEEKGQEKFKDIAVEKGRGGKSSDMEVKMEIVCVKEEPHWDGESEAAEQAGLDSDLNVEEDGVLGTGSVQEPGAAFVNVALEENTCKKEAVEEFIVPDQLGCSTWGSTDNSMLLQITRLSTSMHEGTLFRRRFKERKKKGKVNTDLEETGKYQCDLCNKKFTVKKYLIGHLNYHKYKKPFHCGICNKTFSCETYASAHERIHTGEKPYSCKLCNKAFRCSSHLIKHERTHTEDKPFSCEICKKQFREKTQLKLHELLHKGEEAKQYSCKFCPKKFIHMYKLTIHERNHTGVRPFECKTCGQSFVQKFQLDSHNRLHTGDKPRICEICGKHFITKADLVRHERIHTGTKPYSCDLCQRQFSQKAHLNSHMLVHSGDKPYSCETCSKKFSCKPSLVIHSRVHTNERPYACRVCGRQFKQGGVRRRHEATHTRDKTIVCEVCNEHFALKRELKKHQRVHLVYTCDICNKEFRDKFNFNRHVQTHSEQAEENEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00409534;
90% Identity: -
80% Identity: -