Camp005140.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia amplana
Gene Symbol
-
Assembly
GCA_948474715.1
Location
OX419679.1:1452766-1456830[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00017 0.0091 16.9 1.5 1 23 176 198 176 198 0.98
2 12 0.14 7.4 7.7 2.8 1 23 204 226 204 226 0.88
3 12 0.0003 0.016 16.1 6.4 1 23 232 254 232 254 0.99
4 12 0.00036 0.019 15.8 1.5 1 23 260 282 260 282 0.96
5 12 0.00045 0.024 15.5 3.1 1 23 290 312 290 312 0.98
6 12 8.2e-05 0.0044 17.9 1.5 1 23 318 340 318 340 0.97
7 12 2.1e-06 0.00012 22.8 0.4 2 23 347 368 347 368 0.97
8 12 1.7e-06 9.4e-05 23.1 1.7 1 23 374 396 374 396 0.98
9 12 0.019 1 10.4 2.5 1 23 402 424 402 424 0.98
10 12 0.025 1.4 10.0 0.3 1 23 430 452 430 452 0.94
11 12 7.3e-05 0.0039 18.0 0.9 3 23 460 480 458 480 0.97
12 12 1.7e-07 9.1e-06 26.3 2.3 1 23 483 505 483 505 0.99

Sequence Information

Coding Sequence
ATGTCTGAAAAGGAAACTGAGTCAGTAGACGACGAAACGACGGTGGAAACAGTAATAGTTAAGAACGAGTTGGACTGTATTGAAGAAAAAGGTCAGCTACAATTAAAAAAAGTTACGGATGAAAAGGGGATGGGAGGAGAATCACCGGAAACTGTAGAAGTGAAGATGGAGATAGTATGTGTAAAGGAGGAGCCACACTGGGACGGAGCGAGTGAGACTGAACAAGCGGGCTTGTACGGTGACCACACAACTGAAGAGGGATCCGTGCTCGGGACAGGGTCTATGCAGAAACCTGGAGTAGCATTTGGGAATGCTTCACTAGGAAACACATGCAAACAAGAGGCTGTTGAAGAATTCATTGTGCCAGACCAATTAGGGAGCTCCACTTGGGGCTCCACAGACAACAGCGTGTTACTACAGATAACCAGACTATCTACCATGCATGAAGGAACCCTGTTCAGAAGGAGGTTCAAGGAAAGAAAGAAAAAAGGAAAAGTTAACACGGAACTTGAAGAGACTGGGGAATATCAATGCGATCTATGCAGCAAGAAGTTCACAGTAAAAAAGTATTTGATCGGCCATCTTAACTATCACAAGTATAAAAAACCATTTCATTGCGGTATATGTGACAAAACGTTTTCGTGTGAGACTTACGCGTCTGCGCACGAGAGGATACACACTGGTGAGAAACCATACAGTTGCAAGCTCTGCAATAAAGCTTTCAGGTGCTCCAGCCATCTGATCAAGCATGAAAGAACTCATACAGAGGAGAAGCCCTTCTCGTGTGAAGTTTGTAAAAAGCAATTTAGAGAGAAAACACAACTAAAGCTTCATGAGCTTTTACACAAAGGGGAAGAGGCAAAACAGTATCCTTGCAAGTTTTGTCCAAAGAAGTTTATACATATGTATAAGCTGACAATTCACGAGCGAAATCATACTGGGGTTAGGCCGTTTGAGTGTAAAACGTGCGGGCAGAGCTTTGTTCAAAAGTTCCAACTAGACAGTCATAACAGATTACACACCGGCGACAAACCGCGTGTATGCGAAATATGCGGCAAGCATTTTATAACAAAGGCGGACTTAGTGAGACACGAGCGCATACACACAGGCACCAAGCCGTACAGCTGCGATGTATGCCAGCGGCAGTTCAGCCAAAAAGCGCACTTAAACTCTCACATGTTAGTTCACAGCGGAGAGAAACCCTACTCGTGCGAGACATGCTCAAAGAAGTTCAGCTGCAAACCCTCTTTGGTTATTCACTCGCGGGTACACACGAACGAGAGACCGTACCCGTGCCGGGTATGCGGGAGGCAGTTCAAACAGGGTGGCGTCAGGAGGAGGCATGAAGCGACTCACACGAGGGACAAAACCATAGCATGCGAAGTGTGCAACGAACATTTTGCCCTTAAAAGGGAGCTGAAGAAACACCAAAGGGTACACGTGGTGTACACTTGTGATATATGCAATAAGGTGTTTAGGGATAAATTCAATTTTAATAGACACGTGCAGACGCATAGTGAGCAAGCGGCGGAAACCGAGGAAAACTAA
Protein Sequence
MSEKETESVDDETTVETVIVKNELDCIEEKGQLQLKKVTDEKGMGGESPETVEVKMEIVCVKEEPHWDGASETEQAGLYGDHTTEEGSVLGTGSMQKPGVAFGNASLGNTCKQEAVEEFIVPDQLGSSTWGSTDNSVLLQITRLSTMHEGTLFRRRFKERKKKGKVNTELEETGEYQCDLCSKKFTVKKYLIGHLNYHKYKKPFHCGICDKTFSCETYASAHERIHTGEKPYSCKLCNKAFRCSSHLIKHERTHTEEKPFSCEVCKKQFREKTQLKLHELLHKGEEAKQYPCKFCPKKFIHMYKLTIHERNHTGVRPFECKTCGQSFVQKFQLDSHNRLHTGDKPRVCEICGKHFITKADLVRHERIHTGTKPYSCDVCQRQFSQKAHLNSHMLVHSGEKPYSCETCSKKFSCKPSLVIHSRVHTNERPYPCRVCGRQFKQGGVRRRHEATHTRDKTIACEVCNEHFALKRELKKHQRVHVVYTCDICNKVFRDKFNFNRHVQTHSEQAAETEEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00411715; iTF_00412752;
90% Identity
-
80% Identity
-