Basic Information

Insect: Cydia strobilella
Gene Symbol: -
Assembly: GCA_947568885.1
Location: OX387681.1:15677618-15689534[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0097 0.6 11.3 0.6 3 23 206 227 205 227 0.96

2 23 0.31 19 6.5 0.2 1 21 614 634 614 635 0.96

3 23 7 4.3e+02 2.3 0.3 1 22 676 697 676 699 0.82

4 23 0.0019 0.12 13.5 0.6 3 21 710 728 708 729 0.95

5 23 0.44 27 6.1 0.1 3 23 738 759 736 759 0.91

6 23 4.2 2.6e+02 3.0 0.4 3 23 779 800 777 800 0.89

7 23 0.0018 0.11 13.6 0.8 1 23 806 829 806 829 0.92

8 23 0.13 8.1 7.7 0.0 1 23 855 878 855 878 0.90

9 23 0.02 1.2 10.3 3.4 1 23 883 905 883 905 0.97

10 23 0.018 1.1 10.4 0.2 1 23 911 934 911 934 0.95

11 23 0.0024 0.15 13.2 1.3 1 23 947 969 947 969 0.97

12 23 0.0015 0.094 13.8 4.0 1 23 1018 1041 1018 1041 0.96

13 23 0.0071 0.44 11.7 1.8 1 23 1113 1136 1113 1136 0.96

14 23 0.0012 0.071 14.2 2.1 2 23 1163 1185 1162 1185 0.95

15 23 0.091 5.7 8.2 0.0 3 23 1192 1213 1190 1213 0.93

16 23 0.01 0.64 11.2 0.2 1 21 1257 1277 1257 1278 0.95

17 23 0.0013 0.08 14.0 0.6 1 23 1288 1310 1288 1310 0.93

18 23 0.00012 0.0072 17.3 0.3 2 23 1402 1424 1402 1424 0.93

19 23 3.5e-07 2.1e-05 25.3 1.4 3 23 1431 1451 1430 1451 0.98

20 23 0.44 27 6.1 0.1 1 23 1471 1493 1471 1494 0.94

21 23 0.13 7.8 7.8 0.0 1 23 1518 1540 1518 1540 0.97

22 23 0.029 1.8 9.8 0.6 1 23 1546 1569 1546 1569 0.95

23 23 0.00094 0.058 14.5 0.4 1 23 1577 1600 1577 1600 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0097	0.6	11.3	0.6	3	23	206	227	205	227	0.96
2	23	0.31	19	6.5	0.2	1	21	614	634	614	635	0.96
3	23	7	4.3e+02	2.3	0.3	1	22	676	697	676	699	0.82
4	23	0.0019	0.12	13.5	0.6	3	21	710	728	708	729	0.95
5	23	0.44	27	6.1	0.1	3	23	738	759	736	759	0.91
6	23	4.2	2.6e+02	3.0	0.4	3	23	779	800	777	800	0.89
7	23	0.0018	0.11	13.6	0.8	1	23	806	829	806	829	0.92
8	23	0.13	8.1	7.7	0.0	1	23	855	878	855	878	0.90
9	23	0.02	1.2	10.3	3.4	1	23	883	905	883	905	0.97
10	23	0.018	1.1	10.4	0.2	1	23	911	934	911	934	0.95
11	23	0.0024	0.15	13.2	1.3	1	23	947	969	947	969	0.97
12	23	0.0015	0.094	13.8	4.0	1	23	1018	1041	1018	1041	0.96
13	23	0.0071	0.44	11.7	1.8	1	23	1113	1136	1113	1136	0.96
14	23	0.0012	0.071	14.2	2.1	2	23	1163	1185	1162	1185	0.95
15	23	0.091	5.7	8.2	0.0	3	23	1192	1213	1190	1213	0.93
16	23	0.01	0.64	11.2	0.2	1	21	1257	1277	1257	1278	0.95
17	23	0.0013	0.08	14.0	0.6	1	23	1288	1310	1288	1310	0.93
18	23	0.00012	0.0072	17.3	0.3	2	23	1402	1424	1402	1424	0.93
19	23	3.5e-07	2.1e-05	25.3	1.4	3	23	1431	1451	1430	1451	0.98
20	23	0.44	27	6.1	0.1	1	23	1471	1493	1471	1494	0.94
21	23	0.13	7.8	7.8	0.0	1	23	1518	1540	1518	1540	0.97
22	23	0.029	1.8	9.8	0.6	1	23	1546	1569	1546	1569	0.95
23	23	0.00094	0.058	14.5	0.4	1	23	1577	1600	1577	1600	0.96

Sequence Information

Coding Sequence: ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAGCCTCTCGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCGTACAAATAAACGAGAATGACGGCATGCCATCGAATGCCTGCAGGAAATGCGTGGACAACGTCAATAACTGGCACATATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGGTGAACATAAAAAGTGAACCTTTATCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGGAAGTTATAATGAGGTTGCCAGTAGCAGTAAAGCACAACCGGAAGGCCCTCCAATCTTGGCTTCGCTGGGGCTTACACCGCGGAGTGATAAGGGCGTTGAGAGCGAAAAAGACGAGGAGGACGAAGATGAAGAGATGATGGGGCAGGCCCAGCAGCAGTATACCAAAGCCGTGCCCAACATGCCGGAGGTGTCCATCACCGTCATGCGGCCCACCGGGGAGACCCTGCACGCGCGCCAGGGCATCCAGCAGCTCGCCTCCAAGGACTGCCTCGTGTGCGGCCGCGCCTACAGGTACTCCCACAACGCTCGTCGCCACGAGCTCACCGCGCACAGCTTCGACCGCTACACCAATAAAATCAACCTTCCGAAAAAACCCAACCCCACCAAACATTTGCAACCCAAATTCAGACTTAACCCGTTCAACCCCAAAGCGCGACTCATGCCCAACCCCATCAATCACAAGCAGTTCCAAAAGCCGATGCCATCGAGGATCATGCCCTCGCGAGTCGTCGCTCCCCCGAAACCTATACCGATCAAGCAACCGAGCAAACCAGTTCATAACAACTTACCATACCCCTTGCGTATAAAAGCACTGAAGGATCTGCAAATTAAGAAGAAGGAACCACAAATCTTAAAGACCCTTCTCACGTCTAAACCCGAGCTGTTGGTCTCTGCACCCGAAATTATTAACTCGGGACCGGAGAGCCCGGAAACCTTAATATCGGAGCCGGAGATAGCGTCTTTCCAAGTTGAAACTATTTTGTCGGAACCCAGTTACGACCAAACCCAGGAGGAGGAGGAAGCCGATGAATCCCATAATCAAAATCAGCATTATGACACAGTCGATATGGAATCCGACAACGAGATCGAAATCGCCCGTCAACAAGAGAATGAGGGGGAAATCGATGAGACTCAAGAGGAACATGACGGAGATGATAACATGCAACAAGATAATGAACCAATGGAAGGCATAGAAGGTGAAATAAGTGAGAACGAGAATGGACAACAGGAGGAAGATGATGAACATGCTGGCCAGCGAGATATCACAATAGATGAACAAAATGATATTCAAGCTGAGGCCGAGAGAGATAATAGTGAAAGTAATGGAGACAGAGAGGAGGAACAGGAAGATGGTAACAATGCCGAGGATAACGAAAACGAAAATGAGGAGGACGAGGATCTCCCGCCGGGCCTAGCGCCGGTAGTAGAAATCAACGAGGATATGCAGACTAATTCGTACAACAGCGAACAGAATGAAGACGAAGAGAAGCTTGATGAATCCGCTGCCAACGAAACCATCGAGGAAGATGTCAAGGAATTTGATCCCGACAAGATCTACGTCACGAAAACGCAGAGAGATTTTATCAACAAATATAGAGATATCATACAACAGATAAACACTAAAACATGTCTTTGCTGCGATAAGGAACATCCCCGCAGAAAAGCCGTCATACAACATTTACAGAAAAATGGACACAAAGTACCAAAGCACACGTGCTATAATTGTGTTATAACTTTTGGCCATATTGGCGCATTGCTCAGTCACATGAGAGCTAACGTTTGTACGGACTTGTGGAAGGTCATTTACAATGAACAGGGCATAACTGACGACCTGGTTATGGAAGAGCCCAAAAGCAACAAGGTCCAGTATAAGGATATTTTCAATGCTAGATCGTATGCATGTAAACTGTGCCCGGCAAAATTCCAACTTAAACAGTTTATTATGAAGCACGTTCTGGATGTCCATGAGGATGGCCAGTCGCAGGTGCAGATGGCCTGCGTACACTGCGGGTCTAGATTCAAGGATAGGTCCCTGTGGAAGAGGCACATCCGGAACGGGGAATGCACAGTTTACATCGCATGCGATCTATGCCCTGAGAAATTCGTCAATATACAAGACTTCAACGACCATGCTCTACATGTGCACGCCGGCAGTTTCGATCCCGACAATCAAAAAAATTGCATCGACGGCCGCCCCACCGACTGCCCTCTATGCGGCAAGAAACACCCCAACTATCCTATCCTGGTGAAACATTTGAAGACCGCTCATAACGAGGACAGACCGCACTACTGCCAGAATTGTGATGCTAAATTCGAAACAAGCGTCGACCTGAATAAGCATATCTACGCCGAACATTCCGATAAAGTGTTAGGAGCGCAGCCTATCGAGCCCGACATGTCGCTCGTCAAGGAGGAAGCGGAGGAATACCATTACTCGTGCACGGAATGTAACGCCATATTCGAAACCGTAGACGCCTGGACTGACCACCAGGTCGCGGAACACAATCAAGTCGCACACCACTGCGACCAGTGCGAAAAGAAGTTCCTGCGTCCGTCCGAGCTGGCGGAACACAAAAATACGCATTTGAGAGTGAAGTTCTACCCCTGCAGCGTCTGCTCCAACTCCTACAGCACGCCGCAGAAACTGTCCGAGCACGTGCAGCAGGCGCACCCCGGCGCTGCGGCGATGGCCGCAGGCGATTCCGAATTCTTTTGTGATATTTGCATCAGGTCCTTCAAAAGTCGACAGGCCTACTCCAACCACATGCGCATCCACGCCAAAGTTCCCACCACGAACAGAAAACCGGGCGAGGCTAAAGGGTTTGCCCCGCAGATAATCGGTAAGCCAATAAAACAGTTCCCCATGATCCAGACGAGCTTCGCCGCGTTCAAGCCCAACATTAACGTTCCCAACGCCCCATACTGCTGCGACATATGCGGAAAGGGCTTCATGCACAAGAAAAATATATGGAAACATAAGAAAGTTTTGCACGCGGATATCCTCAACGAGAGGAACGACAGCGAGGAAAACACCATGCAGGCGTCCACGGAGGAGGACGAATATAACGTCGACGAAAACGGTATCGCGTTGTCGACGCCACAATTCAACAGCTTCAACTTTTCGAACTTCGCTAACAACGCCCAACAACATCAACAGGCGCAGCAACCGGCGGCGGCGGCGGCGGCGCCCGCGGACGCGACGCCGTTCTCGTGCGAGCTGTGCTTCAAGCGCTTCCCGCTGCGGACGAGCCTCTGGAAGCACAAGCGCGCCAAACACGGCATTATCAACGCGAGTGTGTCCGGCAACCCCGAGAACCAAGCGCAACCGTCTCAGCCCTCGGAAGGTGGCAGGTCCAGTTGCACAATTTGCAAGATAACATTCTCAGATAAAAAGTCGTACTACCGTCACAGAAAGAACGTGCACAAATCCTCGGCACAAATATGTAAAATCTGCGGAAAACCGGTGAACTCGACGTTGGAGCTGTACGAACATTTGAAGGCGGCGCACGCTCGTGAATTACTAGGATATAACGCTAACCAGGGCACGAGTAAGGCGCAAGATATATCTCAGGAGGCTGAGGTGGAGTATGAGGCCGAACCCGAAATCGCGGACCCCAGCGCGGAGTATCAAGCTCGATACCCGTGCGACACGTGCGGGAAGCAATTCGTGGGGCTCCTGGCGCTTCAGAACCACCAGTGTATAAATCAATCGTCTTCGGAACCTCAAACGTTCGACTGTGAGATCTGTCACAAGAGTTACACGTCGATAGCCGCGCTGAAGAGTCATCGCGGCTGGCATCTCCGCTCGCCCGACGGCAAGGCCGCCGCCAACAACAGCGGCCTGTGGATGCCGCAGCACAAAGTCACCAGCAAGGTCAGCAAGTACGAGGTCGTCGACCCCTCCCAGCTCGCGAGGGTCACCCACTCCACCCCCATCGCGACCGCAACCACCAAGAGAAGACTGCCGCCGGAGGTCGAAGTGACCGTCGTCAACCCTAACAAAAAATTGAGGTCCGACGATTCTATGGAGCTCGAGCATCAGAACAGCATGCCCGGCACCCTAGAAGATAGATACTGCACCATTTGCGACAAAGAGTTTACGAAACGCGCGGCTTACCAGCGCCACATGGACGAAGTTCACCAGCCCAACTCCGTGTTCTGTCCCGTGTGCGACAAGAGCTTCACGCGCAAGTCGACCCTGCTCGTGCACATGAAGAAGCACTACGGGGGCGACGGCGAGGGGAGCTCTAGTGCGATAGGTCAGGCGGAGGAGGACGCGTTCGCGTGCGACGTGTGCGGCGGCCAGTTCCCCAGCGACTTGGCCCTGCTCGCGCACAGGGCGCGCCACCACGCCGAGGAGGAGGAGGAGGAGGAGGACTCCGAGGACGACGGGAACGTGCCGATGGCGCAGCCCGGAGAGTTCACGTGCGGCCAGTGCGGCGACGGCGTGGCGACGCCGCGCGACCTGATCGCGCACCGCACTATGCACGCCACCCCCACCAAGTTCTTCTGCAACATCTGCAAAGTTTACTTCGCGCGAGCCCTCGACCTGTCTTCGCACACCCGCGCGAGGCACTCCGACAACGAGAAGGTTTACTTCCCCTGTGCCATGTGCGAACGTTTCTATATGAACAAGAAGAGTTTGCAGCGACACATTGAGATGGCTCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPLVLASKIKDCVAVQINENDGMPSNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEVNIKSEPLSDEAYDDGVVIDGSYNEVASSSKAQPEGPPILASLGLTPRSDKGVESEKDEEDEDEEMMGQAQQQYTKAVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINLPKKPNPTKHLQPKFRLNPFNPKARLMPNPINHKQFQKPMPSRIMPSRVVAPPKPIPIKQPSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSAPEIINSGPESPETLISEPEIASFQVETILSEPSYDQTQEEEEADESHNQNQHYDTVDMESDNEIEIARQQENEGEIDETQEEHDGDDNMQQDNEPMEGIEGEISENENGQQEEDDEHAGQRDITIDEQNDIQAEAERDNSESNGDREEEQEDGNNAEDNENENEEDEDLPPGLAPVVEINEDMQTNSYNSEQNEDEEKLDESAANETIEEDVKEFDPDKIYVTKTQRDFINKYRDIIQQINTKTCLCCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKVIYNEQGITDDLVMEEPKSNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSQVQMACVHCGSRFKDRSLWKRHIRNGECTVYIACDLCPEKFVNIQDFNDHALHVHAGSFDPDNQKNCIDGRPTDCPLCGKKHPNYPILVKHLKTAHNEDRPHYCQNCDAKFETSVDLNKHIYAEHSDKVLGAQPIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGAAAMAAGDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEAKGFAPQIIGKPIKQFPMIQTSFAAFKPNINVPNAPYCCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDEYNVDENGIALSTPQFNSFNFSNFANNAQQHQQAQQPAAAAAAPADATPFSCELCFKRFPLRTSLWKHKRAKHGIINASVSGNPENQAQPSQPSEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQICKICGKPVNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEAEVEYEAEPEIADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQSSSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKYEVVDPSQLARVTHSTPIATATTKRRLPPEVEVTVVNPNKKLRSDDSMELEHQNSMPGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGEGSSSAIGQAEEDAFACDVCGGQFPSDLALLAHRARHHAEEEEEEEDSEDDGNVPMAQPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHSDNEKVYFPCAMCERFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010410;
90% Identity: iTF_00680834;
80% Identity: -