Cstr010004.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Cydia strobilella
Gene Symbol
-
Assembly
GCA_947568885.1
Location
OX387688.1:7972836-7990844[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00011 0.0071 17.3 0.1 3 23 131 151 130 151 0.97
2 16 1e-06 6.4e-05 23.8 1.2 1 23 157 179 157 179 0.99
3 16 6.5e-06 0.0004 21.3 2.7 1 23 185 207 185 207 0.99
4 16 7e-07 4.3e-05 24.3 1.4 1 23 222 244 222 244 0.98
5 16 0.00013 0.008 17.2 0.7 1 23 259 281 259 281 0.98
6 16 5.9e-05 0.0037 18.2 3.1 1 23 296 318 296 318 0.98
7 16 1.3e-05 0.0008 20.3 2.1 1 23 324 346 324 346 0.99
8 16 0.042 2.6 9.3 1.8 1 23 353 375 353 375 0.98
9 16 7e-07 4.3e-05 24.3 2.3 1 23 381 403 381 403 0.99
10 16 0.048 3 9.1 1.8 1 23 410 432 410 432 0.98
11 16 2.8e-06 0.00018 22.4 1.5 1 23 438 460 438 460 0.99
12 16 0.00054 0.033 15.2 0.7 1 23 467 489 467 489 0.99
13 16 3.1e-06 0.00019 22.3 1.9 1 23 495 517 495 517 0.98
14 16 0.0023 0.14 13.2 0.3 1 20 523 542 523 545 0.93
15 16 4.4e-05 0.0027 18.6 1.4 2 23 552 573 551 573 0.96
16 16 4.1e-06 0.00025 21.9 1.4 1 23 579 602 579 602 0.97

Sequence Information

Coding Sequence
ATGTTCGAACAGCAGATCAAGGCTGAGCCCATGAGCTTCTACACATCCCACGCCCACGTCCACTCCGGCCCGCCCACGATCGTCCGCTCTGACTCGCACGCCATCATTAACATGAACCAGCACCACCCCGAAGACTCCAAGGACAGCCTCATAGTACAACAGCAAGTACAACATCAGCAGGATCTGATGGATCAACAACACCAGCAAGATTTACAGCAGGATGACGAGGTTAGTGAGCTAAGCTTTAAAGGAATGGATGATGAAGGCGTCGAAATGGATATGGATGGTCGCCAATGCTCACAGGGCTTGGGCATCGATATGGGTTCAGTTCAAACAAAAATGGAAGTATCAAATGGAGGCCAAACAACACCACGATCAAAACCACAGGCTTGTAAGGTTTGCGGGAAGGTACTCTCGTCCGCTTCATCTTATTACGTTCATATGAAGCTTCATTCCGGAAACAAGCCTTTTCAGTGCACGGTTTGCGACgcagctttctgccgcaaaccgtacttggaagtccacatgcgtacacacaccggcgagaggcccttccagtgtgatctgtgcctcaaacgcttcacccagaagtccagcctcaatacgcacaagcgcgtccacaccgatgagcacatgcgcgccttgatggtgaaggagcggccctacaagtgtgagctctgtggcgtcaggttcacgcagagctccagcctcaaccgccacaagaaaatacacacggAGGAACACAGACGCGCGCTGCTGGCCAAGGAACGGCCCTACCAATGCGGCGTCTGCTATCTCAGATTCACGCAGAAATCGAGTTTGGGCCGGCACGGAAAAATTCATACCGAGGAGCACAGACGAGCCCTGTTAGAGAAAGTgcggccgtaccagtgccacatctgttttatgcgcttcactcagaagtccagcctgggccgacatgGGAAAATACATACTGgcgagcggccctatcagtgcgacgcctgtctcaagcgcttcacgcagaagtccagcctcaatatacataagaggacgcactcagTCCagggcagaccgttccagtgcctgtcctgtcccgccgccttcacgtgcaagcagtacctggagattcacacgcgcacgcacaccggcgagcggccctatcagtgcgacatctgcctcaagcgcttcacgcagaagtccagcctcaacatccacaagcggacccactcagtacagggccggcccttccagtgcctacagtgcccggccgccttcacttgcaagcaatacctggagatccataatcgcacgcacacaggcgaaaggccttatcaatgcgatgtttgcctcaagagattcgcgcaaaagtccacactcaatatacataaacgaacgcacacagtgcaaggtcggccgtatcagtgcatggagtgtccggctgcgttcacttgcaagccgtacttggagatacacatgcggactcacaccggcgagaggccgtttgagtgcgatgtctgttacaagcgcttcacgcagaaatcaacgctcaacattcacaagcgaattcacactgGGGAACGGCCTTATGCCTGTGACATTTGTCAGAAACGATTCGCCGTCAAGAGCTACGTAACAGCACACAGATGGTCCCACGTGGCCGACAAGCCGCTGAACTGCGACCGCTGCTCGATGACGTTCACATCCAAGTCGCAGTTCGCGCTGCACATCCGCACGCACACGGCCGGCTCCTGCTACGAGTGTAGCGTCTGCGGCCGCACCTTCGTCCGCGACAGTTATCTAATACGACATCACAATCGCGTGCACCGCGACAATCACAGCAACATGTCGGCCAACAGCATCGGAACCATCAACAACGTCGCGACCAACACCAACAACTCGAATAACAGCAATTTTGTTGATTCGCCCGGCGTTTGTGACTTAAGCTTTGTTCCTATGGTGAATCGTTATATGACGTCGCAAGGAACGCAGGTTTCTATGCAAGATACGAGCAAGATGTCTGCTATGTCGCCACAGTCTATCGCGTCGATATCTTCGCCGCCTCCGCCGCACACCCCCACGCCGCAGCCCCAGATGTCGGGTCAGATGCACCTGGCAGACTGA
Protein Sequence
MFEQQIKAEPMSFYTSHAHVHSGPPTIVRSDSHAIINMNQHHPEDSKDSLIVQQQVQHQQDLMDQQHQQDLQQDDEVSELSFKGMDDEGVEMDMDGRQCSQGLGIDMGSVQTKMEVSNGGQTTPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFQCTVCDAAFCRKPYLEVHMRTHTGERPFQCDLCLKRFTQKSSLNTHKRVHTDEHMRALMVKERPYKCELCGVRFTQSSSLNRHKKIHTEEHRRALLAKERPYQCGVCYLRFTQKSSLGRHGKIHTEEHRRALLEKVRPYQCHICFMRFTQKSSLGRHGKIHTGERPYQCDACLKRFTQKSSLNIHKRTHSVQGRPFQCLSCPAAFTCKQYLEIHTRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTVQGRPYQCMECPAAFTCKPYLEIHMRTHTGERPFECDVCYKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLNCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRDNHSNMSANSIGTINNVATNTNNSNNSNFVDSPGVCDLSFVPMVNRYMTSQGTQVSMQDTSKMSAMSPQSIASISSPPPPHTPTPQPQMSGQMHLAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00010401;
90% Identity
iTF_00022996;
80% Identity
-