Cstr021162.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- Bcl11a
- Assembly
- GCA_947568885.1
- Location
- OX387699.1:5096165-5103822[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 8.9 5.5e+02 1.9 6.8 1 13 173 185 173 198 0.69 2 18 3e-06 0.00019 22.3 2.8 1 23 204 226 204 226 0.97 3 18 0.00028 0.017 16.1 0.3 1 23 232 254 232 254 0.98 4 18 1.2e-05 0.00071 20.5 4.1 1 23 260 282 260 282 0.98 5 18 0.0024 0.15 13.2 3.4 1 23 317 339 317 339 0.95 6 18 6.4e-05 0.004 18.1 1.5 1 23 345 367 345 367 0.92 7 18 6.7e-06 0.00042 21.2 0.2 1 23 373 395 373 395 0.99 8 18 2.3e-06 0.00014 22.7 0.1 1 23 401 423 401 423 0.98 9 18 0.00055 0.034 15.2 4.7 1 23 429 452 429 452 0.97 10 18 1.7e-05 0.001 20.0 0.3 1 23 460 482 460 482 0.98 11 18 1.8e-07 1.1e-05 26.1 1.1 1 23 515 537 515 537 0.98 12 18 0.0019 0.12 13.5 4.2 1 23 543 566 543 566 0.93 13 18 0.00028 0.017 16.1 1.1 1 23 573 595 573 595 0.97 14 18 5e-05 0.0031 18.5 1.0 1 23 612 634 612 634 0.98 15 18 3.2e-05 0.002 19.1 6.0 1 23 640 662 640 662 0.98 16 18 9.7e-06 0.0006 20.7 2.4 1 23 668 691 668 691 0.96 17 18 0.00014 0.0084 17.1 0.5 1 23 697 719 697 719 0.96 18 18 0.0012 0.075 14.1 2.1 1 23 725 748 725 749 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGTTGCATTCGTGTAGCTGCTGCCTGGTGCGGCCGCCGGAGAAAGGACTCAAAACGCTGTACAGACATCTTGGCAAAACAGAGATATATTACGACATGCTGAAAGACTGTTTCGATATAAATCTTGGCATGGGGAATGACGAGTGTGGGATCTGCGAGGTGTGCGTGGTGCGGCTGCGAGACGCGAACGACTTCAAATTGCAAGTGCAGCGCAGCCAGGCCGAGCTGCGCGCGCGGCTCAAGGGAGTGCTCACTACCAGTAACAAAATGAAAATCAAGTTCGAGAGAGCTGCTGGAGAGGAAACCATCATACCGGACATCAAACTGGAGAGGTCTGAAGTGGAGATGGCTGACGGCGAAGTCGTATCAGTGGCGATATACGGAGGACCATCAGGGCCTGCAGCGCAACCCGTTCCTACAGCGTCCAACCACGTCACTTTTATGCTAGAACCAACTCTCACCGACCTCGACGACTCCAAGTCGGCCCCTTCTACCGACCGCGGTAAGCTCTATGAATGTGACATATGCCACAGAAGGTTCCAGAACCCATGTGCGAAAAGAAAACTCATGATACATCGCCGCTCCCACACTGGAGAGAGACCGTACACGTGCGATGTATGCGACAAAAAATTCGTACAAAAGAGCCATTTAAATACTCATTACGCACAGCACATGGGAAAGTTCAAATTCTCCTGCGAATTTTGTGAAATGCGATTCACCCAAAGAAGTCCTTGGGTTGTGCACATGCGGATTCACACTGGTGAAAGACCGTACTCTTGTGAAATATGTAATAAAACATTTAGACTTAAGTGCAACTTAAATGTTCACCAAAAAAGTCATTTTAGATATGATCCCACTAGCGTAGAGCCAGGTGAAATAACAGAATGCAAAAAAGAACTTTCAGAAGAATTGAAAAATCAAGTACCTACAGATAAAATAAATTTCTTATGTGATATTTGCAAAAAGCAATTTTCGGAAGAAAAATACTTAAACACTCATTTGAAACATCACTCTGGAGACTATACATTCACTTGTGAAGTTTGCGATAAGAAATTCAAGACGCAGTCTGCTTTGGATAGTCATAAGTTCGATCATAAGGGAGGAAAACCTTTTAAATGTGAAGAATGTGGCAAAGAGTTTGTATCAAGAAGTGCTTTCGGCCTTCATTTAAGAATTCACACCGGGGATTTTAGATACCCTTGCGATGTGTGTAATAAACAATTCATACAAAAAGCTGGTTTGGTTCAGCATATGCGTGTACACACTGGTGAAAAACCTTACACCTGTGAGATATGCCAAAAGAAGTTCCCATATAGATGTAGCTTTAAGAAACATTTATTAGTCAAACACAACAAGGTTATGGATAAAAAGTTTTCTTGCGATATTTGTGGGAAACTATTTTCGCTGCAGGGGACTTTAGCTAAACATATGGATAAACACGCTGAAAAGGAAATGAAAGGAAATGACTGCAGTGACGTTCCAGGAGAAGCCAAAGAATGCAAAAAAGAGTTTTCAGAAAAAAATAAAAAGCAAACGTATGATTGTGATATATGTAATAAACAATTCAAAAGCAAAGATTATTTGATTGAACATATGCGAACTCACACCGGTGAAAAGCCTTATACCTGTGAATTATGCCAAAGGAAGTTCAGATTTAAAGGTAGCTTTAAAAAACATTTATTTGAAAAACACAATGTTGCTGACAAACCATTTTGTTGCGATATTTGTGGCAAACTATTTGCACTACGAGGGCCTTTAACTAAACATATTAAGAAACATGTTCAGATAGAAAAGCAGGATAAAACGCAAAAGGAAGAACCGAAGGATTTTATGTGTGAAATATGTAGCAAACGATTTTCAGCAAGAGGTACCTTAAAGAATCATAGGATAACACATTCTGAAGAAAGACCATTTGAGTGCGAAATTTGTCACAAGACATTCCGAAAGAAGAGACATTTACAGGACCACAAGATGGTGCACGAGGATTTTAAACAACACTCGTGTGAAGTATGCGGACAACAGTTTAGGCATAAATCTGCCTTAACAGTTCATATACAAAGACTTCATACACAAAGTAAGCCACATGCATGCGATGTTTGCAAAAGGCCGTTTTCAGTCCTTGCCGAATTAAAAACGCATTATCGGGTGCACACTGGTGAGAGGCCATATGCTTGTGAAATATGCTATAAGAAATTTCCACGGCACGACGCAGTTAAAAGACATCTTGTACGAGTTCACCATGAGAAGCCTAACAAATTCATTAAATTAAAAGAATTTAATAATCCTTACTGA
- Protein Sequence
- MEELHSCSCCLVRPPEKGLKTLYRHLGKTEIYYDMLKDCFDINLGMGNDECGICEVCVVRLRDANDFKLQVQRSQAELRARLKGVLTTSNKMKIKFERAAGEETIIPDIKLERSEVEMADGEVVSVAIYGGPSGPAAQPVPTASNHVTFMLEPTLTDLDDSKSAPSTDRGKLYECDICHRRFQNPCAKRKLMIHRRSHTGERPYTCDVCDKKFVQKSHLNTHYAQHMGKFKFSCEFCEMRFTQRSPWVVHMRIHTGERPYSCEICNKTFRLKCNLNVHQKSHFRYDPTSVEPGEITECKKELSEELKNQVPTDKINFLCDICKKQFSEEKYLNTHLKHHSGDYTFTCEVCDKKFKTQSALDSHKFDHKGGKPFKCEECGKEFVSRSAFGLHLRIHTGDFRYPCDVCNKQFIQKAGLVQHMRVHTGEKPYTCEICQKKFPYRCSFKKHLLVKHNKVMDKKFSCDICGKLFSLQGTLAKHMDKHAEKEMKGNDCSDVPGEAKECKKEFSEKNKKQTYDCDICNKQFKSKDYLIEHMRTHTGEKPYTCELCQRKFRFKGSFKKHLFEKHNVADKPFCCDICGKLFALRGPLTKHIKKHVQIEKQDKTQKEEPKDFMCEICSKRFSARGTLKNHRITHSEERPFECEICHKTFRKKRHLQDHKMVHEDFKQHSCEVCGQQFRHKSALTVHIQRLHTQSKPHACDVCKRPFSVLAELKTHYRVHTGERPYACEICYKKFPRHDAVKRHLVRVHHEKPNKFIKLKEFNNPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410532;
- 90% Identity
- iTF_00409507;
- 80% Identity
- -