Camp005392.1
Basic Information
- Insect
- Cydia amplana
- Gene Symbol
- Bcl11a
- Assembly
- GCA_948474715.1
- Location
- OX419679.1:5348023-5353041[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 9.3 5.1e+02 1.9 6.8 1 13 175 187 175 200 0.69 2 18 4.6e-06 0.00025 21.8 2.7 1 23 206 228 206 228 0.96 3 18 0.00029 0.016 16.1 0.3 1 23 234 256 234 256 0.98 4 18 3.1e-05 0.0017 19.2 4.0 1 23 262 284 262 284 0.98 5 18 0.0019 0.1 13.6 6.4 1 23 319 341 319 341 0.98 6 18 6.8e-05 0.0037 18.1 1.5 1 23 347 369 347 369 0.92 7 18 7e-06 0.00038 21.2 0.2 1 23 375 397 375 397 0.99 8 18 1.4e-06 7.4e-05 23.4 0.1 1 23 403 425 403 425 0.98 9 18 0.00058 0.031 15.2 4.7 1 23 431 454 431 454 0.97 10 18 1.8e-05 0.00096 20.0 0.3 1 23 462 484 462 484 0.98 11 18 1.9e-07 1e-05 26.1 1.1 1 23 514 536 514 536 0.98 12 18 0.002 0.11 13.5 4.2 1 23 542 565 542 565 0.93 13 18 0.00029 0.016 16.1 1.1 1 23 572 594 572 594 0.97 14 18 0.00014 0.0078 17.1 1.2 1 23 611 633 611 633 0.98 15 18 3.4e-05 0.0018 19.1 6.0 1 23 639 661 639 661 0.98 16 18 1e-05 0.00055 20.7 2.4 1 23 667 690 667 690 0.96 17 18 7.9e-05 0.0043 17.9 0.5 1 23 696 718 696 718 0.96 18 18 0.0013 0.069 14.1 2.1 1 23 724 747 724 748 0.94
Sequence Information
- Coding Sequence
- ATGGAGGAGTTACACTCGTGCAGCTGCTGCCTGGTGCGCCCTCCGGAGAAGGGGCTAAAAACGCTGTATAAACATCTCGGCAAAACAGAGATATATTACGACATGCTGAAAGACTGCTTCGATATTAATCTGGGCATGGGGAATGACGAATGTGGGATTTGCGAGGTGTGCGTGGCGCGGCTGCGGGACGCGAACGACTTCAAGCTACAAGTGCAGCGCAGTCAGGCCGAACTGCGCGCAAGGCTCAAGGGAGTGCTCACTGCCAGTAACAAGATGAAAATCAAGTTTGAGAGAGCTGCTGGAGAGGAAACCATCATTCCGGACATCAAGCTGGAGAGGTCTGAAGTAGAGATGGCTGACGGCGAGGTCGTATCAGTGGCGATATACGGAGGACCATCAGGGCCTTCAGCGCAACCAGTTCCTACACCTACAGCGTCCAACCACGTCACTTTTATGCTAGAACCAACTCTCACCGACCTCGACGACTCCAAGCCGGCCTCTTCCACCAACCGCAGCAAGCTCTACGAATGTGACATTTGCCACAGAAGGTTCCAGAACCCATGTGCGAAAAGAAAACTCATGATCCATCGCCGCTCCCACACTGGAGAGAGACCGTACTCGTGCGACGTATGCGACAAAAAATTCGTACAAAAGAGCCACTTAAACACACATTACGCACAACACATGGGAAAGTTCAAATTCTCCTGCGAATTTTGTGAAATGAGATTCACCCAAAGAAGTCCTTGGGTTGTGCACATGCGGATTCACACCGGTGAGAGACCATACTCTTGTGAAATATGTAGTAAAACATTTAGACTCAAGTGCAATTTGAATGTTCATCAAAAAAGTCATTTTAGATATGATCCCAATAGCGTAGAGCCAGGCGAAATAACAGAATGCAAAAAAGAGGAGTCAGAAGAATCGAAAAATCAAGCACTTACAGATAAGATAGATTTCACATGTCATATATGCAAGAAGCAATTTTCAGAAGAAAATTACTTAAACACTCATTTGAAACATCACTCTGGAGACTATACATTCACTTGTGAAGTTTGCGATAAGAAATTCAAGACGCAGTCTGCATTGGATAGTCATAAGTTCGATCATAAGGGGGGAAAACCTTTTAAATGTGAAGAATGTGGTAAAGAGTTTGTATCAAGAAGTGCTTTCGGCCTTCATTTAAGAATTCACACCGGGGATTTTAGATACCCGTGCGATGTATGTAATAAACAATTCATACAAAAGGCTGGTTTGATTCAGCACATGCGTGTACACACTGGTGAAAAACCTTACACCTGCGAGATATGCCAAAAGAAGTTCCCATATAGATGTAGCTTTAAGAAACATTTATTAGTTAAACACAACAAGGTCATGGATAAAAAGTTTTCTTGCGATATTTGTGGGAAACTATTTTCGCTGCAGGGGACTTTAGCTAAACATATGGACAAACACACTGAAAAGGAAATGAAAGGTAGTAATGATTGCAGTGACGCCAAAGATTGCAAAAAAGAGTTTTCAGAAAAATCGAAAAGGCAAACGTACGATTGCGATATATGTAATAAACAATTCAAAAGCAAAGATTATTTGATTGAACATATGCGAACACACACTGGTGAAAAGCCTTATACCTGTGAATTATGCCAAAGGAAGTTCCGATTTAAAGGTAGCTTTAAAAAACACTTGTTTGAAAAACACAACATTGCTGACAAACCTTTTTGCTGCGATATTTGTGGCAAACTATTCGCACTCCGAGGGCCTTTAACTAAGCATATTAAGAAACATGTTCAGAAAGAGAAGCAGGATAAAACGCAAAAGGAGGAACCAAAGGATTTTATGTGTGAAATATGTAGCAAACGATTTTCGACTAAAGGTATCTTAAAGAATCATAGGATAACACATTCTGAAGAAAGACCTTTCGAGTGCGAAATTTGTCACAAGACATTCCGAAAGAAGAGACATTTACAGGACCACAAGATGGTACACGATGATTTCAAACAACACTCGTGTGAAGTATGCGGACAACAATTCAGGCATAAATCTGCCTTGACAGTTCATATACAAAGACTTCACACAGAAAGTAAGCCACACGCATGCGACATTTGCAAAAGGCCGTTTTCGGTGCTTGCCGAATTAAAAACGCATTATCGGGTGCACACTGGTGAGAGGCCATATGCTTGTGAAATATGCTACAAGAAATTTCCACGACACGACGCGGTTAAACGACATCTTGTACGAGTTCACCATGAGAAGCCTAACAAATTCATTAAATTAAAAGAATTTAATAATCCTTACTGA
- Protein Sequence
- MEELHSCSCCLVRPPEKGLKTLYKHLGKTEIYYDMLKDCFDINLGMGNDECGICEVCVARLRDANDFKLQVQRSQAELRARLKGVLTASNKMKIKFERAAGEETIIPDIKLERSEVEMADGEVVSVAIYGGPSGPSAQPVPTPTASNHVTFMLEPTLTDLDDSKPASSTNRSKLYECDICHRRFQNPCAKRKLMIHRRSHTGERPYSCDVCDKKFVQKSHLNTHYAQHMGKFKFSCEFCEMRFTQRSPWVVHMRIHTGERPYSCEICSKTFRLKCNLNVHQKSHFRYDPNSVEPGEITECKKEESEESKNQALTDKIDFTCHICKKQFSEENYLNTHLKHHSGDYTFTCEVCDKKFKTQSALDSHKFDHKGGKPFKCEECGKEFVSRSAFGLHLRIHTGDFRYPCDVCNKQFIQKAGLIQHMRVHTGEKPYTCEICQKKFPYRCSFKKHLLVKHNKVMDKKFSCDICGKLFSLQGTLAKHMDKHTEKEMKGSNDCSDAKDCKKEFSEKSKRQTYDCDICNKQFKSKDYLIEHMRTHTGEKPYTCELCQRKFRFKGSFKKHLFEKHNIADKPFCCDICGKLFALRGPLTKHIKKHVQKEKQDKTQKEEPKDFMCEICSKRFSTKGILKNHRITHSEERPFECEICHKTFRKKRHLQDHKMVHDDFKQHSCEVCGQQFRHKSALTVHIQRLHTESKPHACDICKRPFSVLAELKTHYRVHTGERPYACEICYKKFPRHDAVKRHLVRVHHEKPNKFIKLKEFNNPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00410532;
- 90% Identity
- iTF_00410532; iTF_00412727;
- 80% Identity
- -