Cstr017242.3
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- Hr39
- Assembly
- GCA_947568885.1
- Location
- OX387675.1:57932239-57950784[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 0.00016 21.8 0.1 1 21 35 55 35 62 0.91 2 2 4.8e-66 4.4e-62 211.4 0.0 164 408 96 352 70 352 0.86
Sequence Information
- Coding Sequence
- ATGTGTCTACGCGGCGGCAGTTGTCCTGTCACGGTCGCCACTAGGAAAAAGTGCCCGGCGTGTAGATTTGACAAGTGCCTTGGCACTGGGATGAAGCTGGAAGCCATACGAGAAGATAGAACACGAGGCGGCCGCTCAACGTACCAATGCTCTTACACATTATCAGGAGCAGTGTCGACTGGTTCATTACTCTCCGCGCCCGTGCCTCCTACGTTACGCCACGCCTCGAGCCTCACTTGCGTGAACGGCCCCGGCTCATACAGCCGAGGGGAGACCAGCAACAGTCGACTCACGCCGGAGATACCCCCGTTATTGCAGGAAATAATGGATGTGGAGCATCTCTGGCAATACAACGAGTCGGAGCTGAACCGCCTGGGCAAGTCAACGGGCAGCCCCTCGGCCAACCCTTTACTAGCAGCCTCAGGAATCACGGCCCAGAACTCTAGCCCAGACTTTCTGGCAGATCTGTGCAACATAGCCGATCATAGGCTGTACAAGATCGTCAAATGGTGCAAGAGCTTGCCGCTATTTAAGAATATTTCGATCGACGACCAGATCTGCTTGCTGATCAACAGTTGGTGCGAGCTACTAGTACTGTCTTGCTGCTATCGCGGTGTGGGGACCCCAGGGGAAGTACGCGTGGGGGGAGGGAGGGGCATCACGCTACACCAGGCTGCCAAATTGGGTCTGACTCCGTGCATAGAGCGTATGCTGAGCTTCACGGACCACCTCCGACGGCTGAGGGTCGATAGGTACGAGTACGTGGCGCTCAAGGTCATCGTGCTGCTCACGTCAGACGCCCCAGAGCTAAGAGAAGCGGAGAAAGTCCGCGCCTCACAAGAGAAGGCGCTAGGTGCGCTACAGGCCTACACGGCGTCGCACTCGCCAGACACGCCTGCCAAGTTTGGCGAGCTGCTGCTGCGTATACCGGAGCTGCAGCGCACCTGCCAGTTCTTCATGCAAGTTGGCAAAGAAATGTTGAACCCGGCGAACAAAAGCAAAGACGGCGACGGACCCAGCTTCAATCTGCTGATGGAGCTGCTAAGGGGAGACCACTGA
- Protein Sequence
- MCLRGGSCPVTVATRKKCPACRFDKCLGTGMKLEAIREDRTRGGRSTYQCSYTLSGAVSTGSLLSAPVPPTLRHASSLTCVNGPGSYSRGETSNSRLTPEIPPLLQEIMDVEHLWQYNESELNRLGKSTGSPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVGTPGEVRVGGGRGITLHQAAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELREAEKVRASQEKALGALQAYTASHSPDTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156299;
- 90% Identity
- iTF_00412612; iTF_01152277; iTF_00636461; iTF_01152217; iTF_00636605;
- 80% Identity
- iTF_00412612;