Cstr025028.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- -
- Assembly
- GCA_947568885.1
- Location
- OX387686.1:4614803-4631831[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 8.5 1.5e+04 -3.6 0.0 32 41 7 16 6 17 0.84 2 5 2.4e-11 4e-08 33.4 0.0 4 39 246 282 243 286 0.89 3 5 7.2e-13 1.2e-09 38.3 0.1 1 39 297 335 297 338 0.94 4 5 8.9e-15 1.5e-11 44.4 0.0 2 45 353 397 352 397 0.96 5 5 1.5e-18 2.5e-15 56.5 0.0 1 43 404 447 404 449 0.95
Sequence Information
- Coding Sequence
- ATGCGTGCACGCGCGGCATCCCTGGTGCGCCGGGTGCGCGGCAGTCCCAACAGCATTCTGCGATTGATAGCGGACAGGGTTGACTGTCCCTACTTGTCACACTGCGAGGGATTGCATTCTCCCGAAATGCCTGGCCGCGGTTTTCCGCAGGTCAAGCACGAACCGACCTCCGAAGACGACGACTCGCAGTACGCACACGGCTATCTTACCAACCAGATACGATCGTCGCTAGAACTCCATCCAGTGAAGCTCGAGGCCGATATAGACGACAATGCGTCTGCGCATATATTACGGCACTTACAGGGTCCGGAGAGTCTGGAGGAGCTAGCGCCGCCGGCGCCGGCAGGCCCCGCCGCCACGCCGGTCGCCGTCAAACAGGAACCCGCCGAGCCCGCCGTCATACTGGAGACCCTCGCGCCAGCACCGCACTCGGACACGCTGGTATGTAGTAAGGAGGAGGAGGGTTGTCAGGGTTCGGAGAGTCTGAAAGAGCTAGCGCCGCCGTCGCCGGCGGGCCCCGCCGCTACGCCGGTCGAGGGTTCCATCCTCATTGATAGACATAAGACGCTGCCAGGCGCGAACGATGCAGACTCCATGGATTTCATGCCTCTCCTTACTGTTAAAGACGAACCTCTCTCTGAAGGAGAGCAACACCACCTGAGTGGATCAGACACGAGTGATTCCAGCACCCAGCCGGAGCCGCCTCGCGGCAGTCCTAAGAACTGGACGCAGCAAGACATGGAACTGGCATTGGAAGCCTTGCGGACGCACAATATGAGCCTCACTAAAGCATCGGCCACATACGGCATCCCGTCAACAACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCGAAGAAGGAGGGCGCGTCCAAATCCTGGAGCGAGGAGGATCTTCGCGGCGCTCTTCATGCGCTGCGGTCCGGGGCTATTTCTGCCAATAAAGCCAGCAAGGCTTACGGCATTCCAAGCAGCACGCTCTACAAGATCGCTCGGCGCGAGGGCATCCGGCTGGCGGCCCCGTTCAACGCGGCGCCCACCGCCTGGCGCCGCGCCGACCTGGAGCGCGCGCTCGCCTCCATCCGCTGCGGGGCGGCCTCGGTGCAGCGGGCGGCTTCGCAGTTTGGCATTCCTACAGGCACGTTGTACGGGCGATGCAAGCGTGAAGGAATCGAGCTGTCACGGTCTAACCCTACGCCCTGGTCCGAAGACGCAATGGGGGAGGCTTTGGAAGCTGTTAGGGTAGGACAAATGTCAATAAACCAAGCAGCGATCCATTATAATCTGCCTTATTCGTCACTGTACGGACGGTTTAAGAGGTGCAAGTATCAAAGTCCCCAAGCAATGCCTCAACAGAACATGCCGGAGATGGAGATGGAACCTCAACAAGCCCAAATGTACTATCCGCACCAAGTGCCAATGCCTGAGGAATATCATCAGAGCTACATTGTAGAACCCGAAGCCATGCATGCCCCCGTCATTCAGGAGCCCTATGGGATGTACTATCAAGGTTGCAGCAGCGGTATCGCGACGAGTTGA
- Protein Sequence
- MRARAASLVRRVRGSPNSILRLIADRVDCPYLSHCEGLHSPEMPGRGFPQVKHEPTSEDDDSQYAHGYLTNQIRSSLELHPVKLEADIDDNASAHILRHLQGPESLEELAPPAPAGPAATPVAVKQEPAEPAVILETLAPAPHSDTLVCSKEEEGCQGSESLKELAPPSPAGPAATPVEGSILIDRHKTLPGANDADSMDFMPLLTVKDEPLSEGEQHHLSGSDTSDSSTQPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQAMPQQNMPEMEMEPQQAQMYYPHQVPMPEEYHQSYIVEPEAMHAPVIQEPYGMYYQGCSSGIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- -
- 80% Identity
- -