Cstr011905.1
Basic Information
- Insect
- Cydia strobilella
- Gene Symbol
- RFX1_1
- Assembly
- GCA_947568885.1
- Location
- OX387682.1:12185417-12213323[+]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-37 7.5e-33 113.6 0.0 3 78 193 268 191 269 0.97 2 2 1 2.7e+04 -3.9 0.0 25 33 1027 1035 1015 1041 0.75
Sequence Information
- Coding Sequence
- ATGTCCGAGATGGGCTTTGAGAATGTGTTCTACCTGGAGAACTTTGAGTGCTGTGGCGACGAGGTGCTAGTGGAGTCGTCGCCGCCCGCCTCGCCGGTCATGGCGGCGCGGCTCGCTCAGCCTGCGCAGGGAGCGGGCGCGGGCGGCGGCGCGTCGCCGAGCGCCGTGCGGGAGCTCATCGTCATACCGGAGATCTCTAACACCATCAGCTTGCAGCAGGCCATACAACAGGTGTCAAGCACGGTTGTGGAAGTGAACGGAGATAGCTCCGGCCACTCGAGCCCTACGACCGAGGCCCGGCACACATACATCACTGTAGCCAGCGAGGGCAGTAATGGGGTCAACTATCATGTGCAATACGTGGAGCCTCAAGAGATCTACACCCAGGGCCATGAGACTCATATGGAAACCCTACGCTCCTATCCCGTGTATGGCGTCGCAACGGTCAACGCGGCCGAGCAGCCTACTGAGTCGTGGAGCGCCGATGAGTTCTCGTACAGCGTGGTCGCGGGCACGGATGAAGCCACGTCACCTGCGCCCGCTCCCACTACACCGCCACAGCCGCGCATGCCGCCCGCCACCGTGCAATGGCTGCTCGACAACTATGAGACTGCCGATGGCGTATCTCTGCCCCGATCGACTCTCTACGCGCACTACCTCCGACACTGCGCGGCCCATCGACTGGACCCAGTGAACGCGGCTTCGTTCGGCAAGCTGATCCGGTCCGTGTTCGTCGGCCTGCGGACAAGGAGGCTCGGCACGCGCGGCAACTCCAAGTATCACTACTACGGCATCAGGGCGAAATCTAGCGTTCCCGCTTCGCCGCCGCCCGATCCTAACGACGAGAAGGCTGATGTCCAAGATATGCAGGAGCCGCGCTCGCGCTCGGCCGAGCCCCCGCCGGCCGCCGGCGGCGTGCCCGGGCTCGCGCACCGGCAGTACCTCGGCGCCGTGGTGGCCGCCTCGCCGCCCGCGCCGCCCCAGCTGCCCGCCGCCGCCGCGGACGACCTGCCGCCGTCCTCTCTCACTGCGCTACAGGACCACCACCGTGAGCACGGCGTCGAATTCCTTGAGGCCGTGGCGGCGCTCGACATAGCTGCCGTGGAGCGCTCCCGCCGCAACTTCTGGCGGAGGCCCCCGCCCGCTCTGTGCCGCCGCGTGCTGTACCGGCTAGCCGCACGAAAGGACGTGGCCGCTTGGTTGCGCCGGGCGGACCTTGAGCTGTACCAGCGGGCCGTGGAGCTGCTCCTGCCCGACGTGCTCCGCCCCATACCGCCGCAGCTTACGCAGGCAATCCGCAACTTCGCAAAGAGCCTAGAGTCGGCGCTAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGGTATACTCTACTAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGGTATACTCTACTAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGGTATACTCTACTAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGGTATACTCTACTAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGCAGCGGCGGGGTCGGGCTGCGCGCCGACGGCAGCGAGCCGCGCGCAGGCGTCGGCGGCGGCGGCGCTGGCGGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTCGCGCAGGCCGCGCGTGCCGTGCTCGCCAACCAGCACCAGATCCAGAAGATGCTGTCGGACCTGAACCGCGTGGACTTCCGCGTGGTGCGCGAGCAGGCGGCCTGGGCGTGCTCGCGCGGCAGCGCCGCCGCCGCGCACCGCCTCGAGGCAGACTTCAAGGCGACACTAGGCCGCGGGGCAACGCTAGAACAATGGGCAGCGTGGCTGGAAGGGTGCGTTCGCGGCGCGTTAGCGGCCCACGAGCGCCGACCGGATTACACGGCACGAGCCCGTCGCTTGCTGCTCGACTGGTCGTTCTACTCATCGCTAGTCATACGCGAGCTTACGCTAAGATCGGCGGCGTCGTTCGGCTCGTTCCACCTGATCCGCCTGCTGTACGACGAGTACGTGTCGTACCTGATCGAGCGGCGCGTGGCGCAGCACCACCGCGCGCCGCCCATCGCCGTCATGCAGCGCGCGCCTGAGGAAGAGGAAGACGTAGCCGAAGAAGCACCCCGGGATGAAGAGGAAGAGGGCGAGGGGGACTGGGACTGGGGCGACGACGACGAGGAGGAAGACGAGCCGCTGCCCTGCAAGAAGGCCAAGCTGCCGGAGTAA
- Protein Sequence
- MSEMGFENVFYLENFECCGDEVLVESSPPASPVMAARLAQPAQGAGAGGGASPSAVRELIVIPEISNTISLQQAIQQVSSTVVEVNGDSSGHSSPTTEARHTYITVASEGSNGVNYHVQYVEPQEIYTQGHETHMETLRSYPVYGVATVNAAEQPTESWSADEFSYSVVAGTDEATSPAPAPTTPPQPRMPPATVQWLLDNYETADGVSLPRSTLYAHYLRHCAAHRLDPVNAASFGKLIRSVFVGLRTRRLGTRGNSKYHYYGIRAKSSVPASPPPDPNDEKADVQDMQEPRSRSAEPPPAAGGVPGLAHRQYLGAVVAASPPAPPQLPAAAADDLPPSSLTALQDHHREHGVEFLEAVAALDIAAVERSRRNFWRRPPPALCRRVLYRLAARKDVAAWLRRADLELYQRAVELLLPDVLRPIPPQLTQAIRNFAKSLESALAAGSGCAPTAASRAQASAAAALAAALRRYTSLNHLAQAARAVLANQHQIQQVYSTSGGVGLRADGSEPRAGVGGGGAGGRAAPLHLAQPPRAGRACRARQPAPDPAAAGSGCAPTAASRAQASAAAALAAALRRYTSLNHLAQAARAVLANQHQIQQVYSTSGGVGLRADGSEPRAGVGGGGAGGRAAPLHLAQPPRAGRACRARQPAPDPAAAGSGCAPTAASRAQASAAAALAAALRRYTSLNHLAQAARAVLANQHQIQQVYSTSGGVGLRADGSEPRAGVGGGGAGGRAAPLHLAQPPRAGRACRARQPAPDPAAAGSGCAPTAASRAQASAAAALAAALRRYTSLNHLAQAARAVLANQHQIQQVYSTSGGVGLRADGSEPRAGVGGGGAGGRAAPLHLAQPPRAGRACRARQPAPDPAAAGSGCAPTAASRAQASAAAALAAALRRYTSLNHLAQAARAVLANQHQIQKMLSDLNRVDFRVVREQAAWACSRGSAAAAHRLEADFKATLGRGATLEQWAAWLEGCVRGALAAHERRPDYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAQHHRAPPIAVMQRAPEEEEDVAEEAPRDEEEEGEGDWDWGDDDEEEDEPLPCKKAKLPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -