Cpom037999.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- JAPFFR010000092.1:21867-32552[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1 1.2e+04 -2.3 0.0 26 45 235 254 229 263 0.83 2 10 0.0072 79 4.7 0.1 21 43 258 280 250 284 0.88 3 10 2.6e-06 0.029 15.8 0.1 21 54 286 319 281 319 0.90 4 10 0.15 1.6e+03 0.5 0.1 22 43 341 362 332 367 0.84 5 10 0.013 1.4e+02 3.9 0.1 21 43 368 390 358 396 0.87 6 10 0.0014 16 7.0 0.3 15 51 399 438 392 440 0.73 7 10 0.016 1.7e+02 3.7 0.1 21 43 436 458 432 463 0.90 8 10 0.0039 43 5.6 1.0 21 43 464 486 456 491 0.87 9 10 0.007 77 4.8 0.1 20 48 491 519 487 523 0.84 10 10 0.03 3.3e+02 2.7 0.1 21 43 520 542 509 547 0.85
Sequence Information
- Coding Sequence
- ATGGATAAGGAGCTCATATTAAATATTGTACAATGGAATGCACAAAGTGTTCGACCGAAACGATTACAATTTGAAGCAATTTTAAATCAAGAAAAAGTTCATATTGCAATAATAAGTGAAACCTGGTTGGAGCCTGAATTGGAGCTGACCTTTAGTGGTTACAACGTATTTCGCTGTGACAGAGACGATGGTTATGGAGGCGTAGCTATTATAGTACATAAGTCCATTCAATCATATTCAAGTACCAGTACATTCATTACCAATAATTCACAGATTGAAATTTTGCATGTGAAGATTACAAATTTTTTCGTAAAGGTGGAAGTGGAGTATGAGGCCCCAGATGAGGTGCGTGTGAAGGAGGAACCCTTGTATGAAGACAGCGTTCCGTATGGTGAGGACAGTGTCCCCTATGATGGGACAGACGAGTCGTCCGGCCTGTACTCCGATCGTGTGGTCAAGCTTGAGGTTCCAGAGCCGGAGCACTCGCAGTCTGATGAAGATTATAAGTATGGTGGAGTGGGGATTTCGCCCGAGCAAACCACCGATGGGGCTGCAGGAGCGCCCGGGGGGAGCGGGGAGCGGGGCGAGCTCATGCTGGTGCTGGAGCCCCTCACTATGCAGGTGCACGCCGAGAGGGTCCACACGCAAGAGGAAGGGAGCGCGGGGGCGCTGGTCGAGCGACGAAAACCGAAGAAAGAGCACATATGTCTACTATGTACCAAGAACTTTAAAGACTCCACCAAATTAAAGGAACACATGAGATGCCACACCGGTGAGAGGCCCTACCCCTGCAACGTTTGTAAGAAAGGATTCATCAAATCCGGTGATTTGAGAAGACATGAGCGCTCTCACACGGGGGAAAAACCGTATTCCTGCAAGATATGCCAAAAACTGTTTTCTGAATCGACCACTTTACGAAGACACGAACGGATTATGCATGGCGAGAAACCTGAAGTCTCACAGGTGAAAAAATACAAACGATCAACCAATATCAAAGAAGATGCGACGGCCAATGTGGGCGACAAACCCTTTGCCTGTGAAGTATGCAAGAAATCGTTCATTCGGGCCTGTGATCTAAAAAGGCATGAACGCTGCCACACGGGTGAAAAACCATATTCTTGTACGATGTGTGATAAACAGTTTTCAGAATCGACCACTTTAAAAAGACACGAGCGGCAGCACACCGGAGAACTGCCGAGGCCACGCGACAGCCTAGAGGCGAGTATAAGAGCGCGGACGTGCCAAATATGCGGAAAATTGTTCAAGAAATCGACTATATTAAAGAACCATATAAGAATCCATACAGGGGAGAAGCCTTACCAGTGCTCAATGTGCGACAGATTGTTCGCACAACATTCCAACTTGAAATCACACGAACGAACGCACACCAATGAAAAACCCTACATCTGTCAAGTATGCAAAAAGCAGTTCTCACAACATAGCACTCTGAGGAGACACGAGCGTACCCACAGGAACGAGAAACCATACTCCTGTGAGATATGCAACAAGACTTTCACACAGGGCAGTACTGTAAAGAGTCATATGAGAATACACACTGGCGAGAAGCCATATTCGTGCGGGGCGTGTGCCCGGGCGTTCACGACTTCGAGCACTTTGAGGAAACACGAACAAACTCATACAGGGGAAACGAGCGGCGATAGTTAA
- Protein Sequence
- MDKELILNIVQWNAQSVRPKRLQFEAILNQEKVHIAIISETWLEPELELTFSGYNVFRCDRDDGYGGVAIIVHKSIQSYSSTSTFITNNSQIEILHVKITNFFVKVEVEYEAPDEVRVKEEPLYEDSVPYGEDSVPYDGTDESSGLYSDRVVKLEVPEPEHSQSDEDYKYGGVGISPEQTTDGAAGAPGGSGERGELMLVLEPLTMQVHAERVHTQEEGSAGALVERRKPKKEHICLLCTKNFKDSTKLKEHMRCHTGERPYPCNVCKKGFIKSGDLRRHERSHTGEKPYSCKICQKLFSESTTLRRHERIMHGEKPEVSQVKKYKRSTNIKEDATANVGDKPFACEVCKKSFIRACDLKRHERCHTGEKPYSCTMCDKQFSESTTLKRHERQHTGELPRPRDSLEASIRARTCQICGKLFKKSTILKNHIRIHTGEKPYQCSMCDRLFAQHSNLKSHERTHTNEKPYICQVCKKQFSQHSTLRRHERTHRNEKPYSCEICNKTFTQGSTVKSHMRIHTGEKPYSCGACARAFTTSSTLRKHEQTHTGETSGDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411723;
- 90% Identity
- iTF_00411723;
- 80% Identity
- iTF_00411723;