Basic Information

Insect: Cydia pomonella
Gene Symbol: -
Assembly: GCA_033807575.1
Location: CM066352.1:6900176-6911693[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.012 0.97 11.3 0.6 3 23 207 228 206 228 0.96

2 23 0.37 31 6.5 0.2 1 21 618 638 618 639 0.96

3 23 8.4 7e+02 2.3 0.3 1 22 680 701 680 703 0.82

4 23 0.0023 0.19 13.5 0.6 3 21 714 732 712 733 0.95

5 23 0.39 33 6.5 0.2 3 23 742 763 740 763 0.91

6 23 4.4 3.7e+02 3.2 0.4 3 23 783 804 781 804 0.90

7 23 0.0021 0.18 13.6 0.8 1 23 810 833 810 833 0.92

8 23 0.16 13 7.7 0.0 1 23 859 882 859 882 0.90

9 23 0.023 2 10.3 3.4 1 23 887 909 887 909 0.97

10 23 0.022 1.8 10.4 0.2 1 23 915 938 915 938 0.95

11 23 0.0029 0.24 13.2 1.3 1 23 951 973 951 973 0.97

12 23 0.0018 0.15 13.8 4.0 1 23 1022 1045 1022 1045 0.96

13 23 0.0085 0.71 11.7 1.8 1 23 1115 1138 1115 1138 0.96

14 23 0.0014 0.11 14.2 2.1 2 23 1165 1187 1164 1187 0.95

15 23 0.11 9.1 8.2 0.0 3 23 1194 1215 1192 1215 0.93

16 23 0.012 1 11.2 0.2 1 21 1259 1279 1259 1280 0.95

17 23 0.0015 0.13 14.0 0.6 1 23 1290 1312 1290 1312 0.93

18 23 0.00014 0.012 17.3 0.3 2 23 1404 1426 1404 1426 0.93

19 23 4.1e-07 3.5e-05 25.3 1.4 3 23 1433 1453 1432 1453 0.98

20 23 0.21 17 7.3 0.1 3 23 1475 1495 1473 1496 0.94

21 23 0.15 13 7.8 0.0 1 23 1518 1540 1518 1540 0.97

22 23 0.034 2.9 9.8 0.6 1 23 1546 1569 1546 1569 0.95

23 23 0.0011 0.093 14.5 0.4 1 23 1577 1600 1577 1600 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.012	0.97	11.3	0.6	3	23	207	228	206	228	0.96
2	23	0.37	31	6.5	0.2	1	21	618	638	618	639	0.96
3	23	8.4	7e+02	2.3	0.3	1	22	680	701	680	703	0.82
4	23	0.0023	0.19	13.5	0.6	3	21	714	732	712	733	0.95
5	23	0.39	33	6.5	0.2	3	23	742	763	740	763	0.91
6	23	4.4	3.7e+02	3.2	0.4	3	23	783	804	781	804	0.90
7	23	0.0021	0.18	13.6	0.8	1	23	810	833	810	833	0.92
8	23	0.16	13	7.7	0.0	1	23	859	882	859	882	0.90
9	23	0.023	2	10.3	3.4	1	23	887	909	887	909	0.97
10	23	0.022	1.8	10.4	0.2	1	23	915	938	915	938	0.95
11	23	0.0029	0.24	13.2	1.3	1	23	951	973	951	973	0.97
12	23	0.0018	0.15	13.8	4.0	1	23	1022	1045	1022	1045	0.96
13	23	0.0085	0.71	11.7	1.8	1	23	1115	1138	1115	1138	0.96
14	23	0.0014	0.11	14.2	2.1	2	23	1165	1187	1164	1187	0.95
15	23	0.11	9.1	8.2	0.0	3	23	1194	1215	1192	1215	0.93
16	23	0.012	1	11.2	0.2	1	21	1259	1279	1259	1280	0.95
17	23	0.0015	0.13	14.0	0.6	1	23	1290	1312	1290	1312	0.93
18	23	0.00014	0.012	17.3	0.3	2	23	1404	1426	1404	1426	0.93
19	23	4.1e-07	3.5e-05	25.3	1.4	3	23	1433	1453	1432	1453	0.98
20	23	0.21	17	7.3	0.1	3	23	1475	1495	1473	1496	0.94
21	23	0.15	13	7.8	0.0	1	23	1518	1540	1518	1540	0.97
22	23	0.034	2.9	9.8	0.6	1	23	1546	1569	1546	1569	0.95
23	23	0.0011	0.093	14.5	0.4	1	23	1577	1600	1577	1600	0.96

Sequence Information

Coding Sequence: aTGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGGGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAGCCTCTCGTCCTCGCATCAAAAATCAAGGATTGCGTGGCCGTACAAATAAACGAGAATGACGGCTTGCCATCGAATGCCTGCAGGAAATGCGTGGATAACGTCAATAACTGGCACATATTTAAGACAGTATGTGAAAGGACACAAAACAAACTACAGTCTCTGATTAAAAAAGATGGCAGCCAACTAGAAGAGGTAAACATAAAAAGTGAACCTTTATCAGATGAGGCCTATGATGATGGAGTGGTTATTGATGGAGGCTATAATGAGgtTGCCAGTAGCAGTAAAGCACAGCCAGAAGGCCCTCCAATCTTGGCTTCGCTGGGGCTCACACCGCGGAGTGATAAGGGCGTCGAGAGCGAAAAAGACGAGGAGGAGGAAGAAGATGAAGAGATGATGGAGCAGGCCCAGCAGCAGTACACCAAGGCCGTGCCCAACATGCCGGAGGTGTCCATCACGGTCATGCGGCCCACGGGGGAGACGCTGCACGCGCGCCAGGGCATCCAGCAGCTGGCGTCCAAGGACTGCCTGGTGTGCGGCCGCGCCTACAGGTACTCGCACAACGCGCGCCGCCACGAGCTCACCGCGCACAGCTTCGACCGCTACACCAACAAAATCAACCCGCCCAAAAAACCCAACCCCACCAAACACTTGCAACCCAAGCTCAGACTCAACCCGTTCAACCCCAAAGCGCGACTCATGCCCAACCCCATCAATCACAAGCAGTTCCAAAAACCGATGCCGTCTAGGATCATGCCCTCCCGAATTGTCGCTCCCCCGAAACCTATACCGATCAAGCAACCGAGCAAACCCGTTCATAACAACTTACCATACCCCTTGCGTATAAAAGCACTGAAGGATCTGCAAATTAAGAAGAAGGAACCGCAAATCTTGAAGACGCTCCTCACTTCTAAACCCGAGCTGTTGGTCTCTGAGCCCGAAATTATCAATTCGGGACCGGAGAGTCCGGAAACTTTAATATCCGAGCCGGAAATAGCGTCTTTCCAAGTTGAAACTATTTTGTCCGAACCCAGTTACGGCCAAAAccaggaggaggaggaggaggccGATGAATCCCATAATCAAAACCAACATTATGACACAGTTGATATGGAGTCCGATAACGAGATCGAAATCGCCCGCCAACAAGAGAATGAGGGGGAAATAGATGAGACCCAGGAGGAACATGACGGAGATGATAACATGCAACAAGATAATGAACCAATGGAAGGCATAGAAGGTGAAGTGAGTGAGAACGAGAATGGACAACAGGAGGAAGATGACGAACAAGGCGGCAGCCAGGGAGACATTACGATAGACGAACAAAATGATATTCAAGTTGAGGCCGAGAGAGATAATGGTGAAAGCAATGGAGACAGAGAGGAGGAACAGGAAGACGGTAACGATGCCGAGGAGAACGAAAACGAAAATGAGGAGGACGAGGATCTCCCGCCGGGCTTAGCGCCAGTTGTGGAAATCAACGAGGATATGCAAACTAATTCATACAACAGCGAACAGAATGAAGACGAAGAGGTGGAGATCGAAGAATCCGCTGCCAATGAAACTATCGACGAAGATGTTAAGGAATTTGATCCGGACAAGATCTACGTCACGAAAACACAGAGAGATTTTATCAACAAATACAGAGATATCATACAACAGATCAACACTAAAAGATGTATTTGCTGCGATAAAGAACATCCCCGCAGAAAAGCCGTCATACAACATTTACAGAAAAATGGACACAAAGTACCAAAACACACATGCTATAATTGTGTTATAACTTTTGGCCATATTGGCGCATTGCTCAGTCACATGAGAGCTAACGTTTGCACAGACTTGTGGAAAGTCATTTACAATGAACAGGGAATAACTGACGACCTGGTCATGGAAGAGCCCAAAGATAATAAGGTTCAGTATAAGGATATCTTCAATGCTAGATCGTATGCATGTAAATTGTGTCCGGCTAAATTCCAACTTAAACAGTTTATTATGAAGCACGTTCTGGATGTGCACGAGGACGGCCAGTCCCGGGTGCAAATGGCTTGCGTACACTGCGGATCCAGATTCAAAGATAGGTCCCTGTGGAAGAGGCACATCCGGAACGGGGAATGCACAGTTTACATCGCATGCGATCTATGCCCTGAGAAATTCGTCAATATGCAAGACTTCAACGACCACGCGCTTCATGTCCACGCCGGCAGCTTCGATCCCGACAATCAGAAAAATTGTATCGACGGCCGCCCCACCGACTGCCCTCTGTGCGGCAAGAAACACGCCAACTATCCTATCTTGGTGAAACATTTGAAGACCGCCCATAACGAGGACAGACCACATTACTGCCAGAATTGTGATGCCAAATTCGAAACCAGCGTCGACCTGAATAAGCATATTTACGCCGAACATTCCGATAAAGTATTGGGAGCGCAGCCCATCGAGCCCGACATGTCGCTCGTCAAGGAGGAAGCGGAGGAATATCATTACTCGTGCACGGAATGTAACGCCATATTCGAAACCGTAGACGCCTGGACCGACCACCAGGTCGCGGAACACAATCAAGTCGCGCACCACTGCGACCAGTGCGAAAAGAAGTTCCTGCGCCCGTCCGAGCTGGCGGAACACAAAAATACGCATTTGAGAGTGAAGTTCTACCCCTGCAGTGTCTGCTCCAACTCCTACAGCACGCCGCAGAAACTGTCCGAGCACGTACAGCAGGCGCACCCCGGCGCCGCCGCCATGGCCGCAGCCGACTCCGAATTCTTTTGTGACATTTGCATCAGGTCCTTCAAAAGTCGACAGGCCTACTCCAACCACATGCGCATCCACGCTAAAGTTCCCACCACAAACAGAAAACCAGGCGAGGCTAAAGGGTTCGCCCCACAGATAATCGGAAAGCCGATCAAGCAGTTCCCCATGATCCAGACGAGCTTCGCGGCGTTCAAGCCCAACATCAATGTTCCGAACGCCCCATACTGCTGTGACATATGCGGAAAGGGCTTCATGCacaagaaaaatatatggaaGCATAAGAAAGTTTTGCACGCGGATATCCTCAACGAGAGGAACGACAGCGAGGAGAACACAATGCAGGCGTCCACGGAGGAGGACGAATATAACGTCGACGAAAACGGTATCGCGTTGTCTACGCCACAATTCAACAGTTTCAACTTTTCTAATTTCGCTAACAACGCACAACAACATCAACAGCAGCAGCCGCAGcagccggcggcggcggcggacgCGATGCCGTTCTCGTGCGAGCTGTGCTTCAAGCGGTTCCCGCTGCGGACCAGCCTCTGGAAGCACAAGCGCGCCAAGCACGGCATCATCAACGCCAGCGCGTCCGGCAACCCCGAGAACCAGGCGCCGCCCTCCCAGCCCTCGGAAGGCGGCAGATCCAGCTGCACGATTTGCAAGATAACGTTCTCAGATAAAAAGTCTTATTACCGTCACAGAAAGAACGTGCACAAATCTTCGGCACAAATATGTAAGATTTGCGGGAAACCGGTGAACTCGACGCTGGAGCTGTACGAACACTTGAAGGCCGCGCACGCTCGGGAATTACTAGGATATAACGCTAACCAGGGCACGAGTAAAGCGCAAGACATATCTCAGGAGGGTGAGATGGAGTACGAGGCCGAACCCGAAATCGCGGACCCCAGCGCGGAGTATCAGGCTCGATACCCGTGCGACACGTGCGGGAAGCAGTTCGTGGGTCTACTCGCGCTCCAGAACCACCAGTGTATAAACCAAACTGTTTCGGAGCCGCAAACTTTCGACTGTGAGATCTGTCACAAGAGCTACACGTCGATAGCCGCGCTCAAGAGTCATCGCGGCTGGCATCTCCGCTCGCCCGACGGCAAGGCTGCCGCCAACAACAGCGGCCTGTGGATGCCGCAGCACAAAGTCACCAGCAAGGTCAGCAAGCACGAGGTCGTCGACCCCTCCCAGCTCGCGAGGGTCACCCACTCCACCCCCACCGCGACCGCCACCACCAAGAGAAGACTGCCCCCGGAGGTCGAAGTGACCGTCGTCAACCCTAACAAGAAATTGAGGTCCGACGATTCTATGGAGCTCGAGCAGCAGAACAGCATGCCCGGCACCCTAGAAGATAGATACTGCACCATTTGCGACAAAGAGTTTACAAAACGCGCGGCGTACCAGCGCCACATGGACGAGGTTCACCAACCCAACTCCGTATTCTGTCCCGTGTGCGACAAGAGCTTCACGCGCAAGTCGACCCTGCTCGTGCACATGAAGAAGCACTACGGCGGCGACGGCGAGACCAGCTCGAGCGCGATGGGGCAGGCGGAGGAGGAGGCGCTGGCGTGCGACGTGTGCGGCGGGCAGTTCGGCAGCGACGCGGCGCTGCGCGCGCACCGGGCGCGCCACCACGCCGAGGAGGAGGAGGACGAGTCCGAGGACGACGGCGACGTGCCGCTGGCGCAGCCCGGCGAGTTCACGTGCGGCCAGTGCGGCGACGGCGTGGCCACGCCGCGCGACCTCATCGCGCACCGCACCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAAGTTTACTTCGCGCGAGCCCTAGACCTGTCCTCGCACACCCGCGCGAGGCACGCCGACAACGAAAAGGTTTACTTCCCCTGTGCCATGTGCGAACGCTTCTATATGAACAAGAAGAGTTTACAGAGACACATTGAGATGGCTCACTGA
Protein Sequence: MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPLVLASKIKDCVAVQINENDGLPSNACRKCVDNVNNWHIFKTVCERTQNKLQSLIKKDGSQLEEVNIKSEPLSDEAYDDGVVIDGGYNEVASSSKAQPEGPPILASLGLTPRSDKGVESEKDEEEEEDEEMMEQAQQQYTKAVPNMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRAYRYSHNARRHELTAHSFDRYTNKINPPKKPNPTKHLQPKLRLNPFNPKARLMPNPINHKQFQKPMPSRIMPSRIVAPPKPIPIKQPSKPVHNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPELLVSEPEIINSGPESPETLISEPEIASFQVETILSEPSYGQNQEEEEEADESHNQNQHYDTVDMESDNEIEIARQQENEGEIDETQEEHDGDDNMQQDNEPMEGIEGEVSENENGQQEEDDEQGGSQGDITIDEQNDIQVEAERDNGESNGDREEEQEDGNDAEENENENEEDEDLPPGLAPVVEINEDMQTNSYNSEQNEDEEVEIEESAANETIDEDVKEFDPDKIYVTKTQRDFINKYRDIIQQINTKRCICCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRANVCTDLWKVIYNEQGITDDLVMEEPKDNKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVQMACVHCGSRFKDRSLWKRHIRNGECTVYIACDLCPEKFVNMQDFNDHALHVHAGSFDPDNQKNCIDGRPTDCPLCGKKHANYPILVKHLKTAHNEDRPHYCQNCDAKFETSVDLNKHIYAEHSDKVLGAQPIEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQAHPGAAAMAAADSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEAKGFAPQIIGKPIKQFPMIQTSFAAFKPNINVPNAPYCCDICGKGFMHKKNIWKHKKVLHADILNERNDSEENTMQASTEEDEYNVDENGIALSTPQFNSFNFSNFANNAQQHQQQQPQQPAAAADAMPFSCELCFKRFPLRTSLWKHKRAKHGIINASASGNPENQAPPSQPSEGGRSSCTICKITFSDKKSYYRHRKNVHKSSAQICKICGKPVNSTLELYEHLKAAHARELLGYNANQGTSKAQDISQEGEMEYEAEPEIADPSAEYQARYPCDTCGKQFVGLLALQNHQCINQTVSEPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVDPSQLARVTHSTPTATATTKRRLPPEVEVTVVNPNKKLRSDDSMELEQQNSMPGTLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLVHMKKHYGGDGETSSSAMGQAEEEALACDVCGGQFGSDAALRAHRARHHAEEEEDESEDDGDVPLAQPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVYFPCAMCERFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00010410;
90% Identity: iTF_00680834;
80% Identity: -