Basic Information

Insect: Cydia pomonella
Gene Symbol: -
Assembly: GCA_033807575.1
Location: CM066358.1:19334925-19342864[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00065 0.055 15.2 2.9 1 23 131 153 131 153 0.99

2 13 3.5e-05 0.0029 19.2 2.0 2 23 159 180 158 180 0.95

3 13 0.017 1.4 10.8 0.6 1 23 181 203 181 203 0.97

4 13 1.7e-05 0.0014 20.2 0.9 1 23 216 238 216 238 0.99

5 13 2e-05 0.0017 20.0 0.8 1 23 248 270 248 270 0.97

6 13 2.8e-05 0.0024 19.5 5.1 1 23 276 298 276 298 0.99

7 13 1.1e-05 0.00094 20.7 3.7 2 23 305 326 305 326 0.98

8 13 5.8e-08 4.9e-06 27.9 0.9 1 23 332 354 332 354 0.96

9 13 0.0019 0.15 13.8 1.9 1 23 360 382 360 382 0.95

10 13 2.5e-06 0.00021 22.8 0.6 1 23 388 410 388 410 0.98

11 13 0.0089 0.74 11.6 6.4 1 23 416 438 416 438 0.97

12 13 1.7e-07 1.4e-05 26.5 1.9 1 23 444 466 444 466 0.99

13 13 0.00066 0.055 15.2 1.1 1 20 472 491 472 494 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00065	0.055	15.2	2.9	1	23	131	153	131	153	0.99
2	13	3.5e-05	0.0029	19.2	2.0	2	23	159	180	158	180	0.95
3	13	0.017	1.4	10.8	0.6	1	23	181	203	181	203	0.97
4	13	1.7e-05	0.0014	20.2	0.9	1	23	216	238	216	238	0.99
5	13	2e-05	0.0017	20.0	0.8	1	23	248	270	248	270	0.97
6	13	2.8e-05	0.0024	19.5	5.1	1	23	276	298	276	298	0.99
7	13	1.1e-05	0.00094	20.7	3.7	2	23	305	326	305	326	0.98
8	13	5.8e-08	4.9e-06	27.9	0.9	1	23	332	354	332	354	0.96
9	13	0.0019	0.15	13.8	1.9	1	23	360	382	360	382	0.95
10	13	2.5e-06	0.00021	22.8	0.6	1	23	388	410	388	410	0.98
11	13	0.0089	0.74	11.6	6.4	1	23	416	438	416	438	0.97
12	13	1.7e-07	1.4e-05	26.5	1.9	1	23	444	466	444	466	0.99
13	13	0.00066	0.055	15.2	1.1	1	20	472	491	472	494	0.94

Sequence Information

Coding Sequence: ATGCTCAACGTAGAGAAGACTTGTCGGACGTGCATGAAAAGCTGTGAAATATTAATAGATCTCTATGAGCCTTTGAAATCGGAAAATGAGAAATGTCCTACTCTGTCCGAGATTTTGGAAGTCTGTACGGCTATGCAGGTATCGAAAGAGGATGGGTTTCCTCAAAAATTATGCGAGGAATGTGTCAAAGCTCTGCAGTTTGCCTACGCCTTCCGAATGCAAGTGCTTAATTCCTATGAAGAGTTCAGGAAAATAATTGAAGCTCAAgcaaatgtaaaaaatgaagAAATTGATGTAGAACTTAAGACCGAGAATCAATTCGATTACGATTTCTGCTATGACGATTTCCTACTCGATGACTTTACCAAACATGAGACTGAAGACAAAACTTATGAGTGTAGCACATGCAACAAGCAGTATACTAATGAAAAAAGGTTTATTAACCACTTAAAAACACATGGAGAACCCAATTTGCCTTGTCCTGTTTGTACTAAAACTTTTCATAAGCAATCTACCCTGAACCGCCATTTAGTGAAACACTACAAGTGTAATATATGCCTTAATTACTTTGAAACAGAAAAGTTACTATTAGAACATATGACCGAGCATGTAGATGTTGAGATTAAGACTGAACAAGAAGATCTTTATAAATGTTCTGAATGTGATGTAGCGTATACTAAGCAGAGGTCTTTAGCTATGCATATGAAAAAGCATAAAGGCAAGGGGAAAAAGGAGAAAAGTTTCTTTTGTGATGTTTGCGGAAAGGAGTTTGGCTTGAAGACATTGCTTCGGAGACATATGAAGCTGCATAGTGAAGAGAGACCATATCAATGCCTGAAGTGTAACAAAAGTTACTCAAGGCATGACCAGTATACTGAGCATATGAATAGACATAATGGAATCAAACCTAATGTGTGTCCACATTGTAgtaaagCATTCAGCCAGCTCTGCAGCCTTAAAGACCACATTCGCACACACACCGGCGAAACTCCTTACCTCTGCTCCGAGTGTGGCAAGGGCTTCAACAACAGCTCTAACTTGCGGCAGCACATGATGAGGCACACCGGGCTCAAGCCCTTCGCGTGTAACTTGTGCCCTAAGAGGTTTTCTACTAAAGGCCAAATGACGTGTCACATCGGTACGCACACTGGAGTACATCCGTACAAATGCGACGAGTGTGGCGCCACCTTTACCAAACCAAATTCGCTGAAGAAACACAAGCTGATACATCTGGGCATCAAACCCTTCGCCTGCGATACCTGCAGCATGCGaTTTTCGTGCAAAGACCACCTCAAGCGCCATTACCGCATCCACACCGGCGAGAAGCCTTACAAGTGCAAGTACTGCGACCGAGCTTTCACGCAGAGCAACGATTTGGCCAAACACACGCGCATGCACGTCGGACAAAACATTTACCAATGCACACAATGCGACATGCGCTTCCGTCTCCTCAGCGAGCTGAAACAGCACTACCCCTCTCATTACATCCCCCGCGGGGAGCCCCTGCCCCTGCCCCTGCCCAAGGAGGCCTCCCTGGACGTGCTCAAGCCGTGCGAGGAAAACAAGGAAGGCACTATTACTATCAGGTTCAGCAGCAATGGGATGGACAAGGATGGGTTGCATGGGAATATTACTATCGATATTACaccataa
Protein Sequence: MLNVEKTCRTCMKSCEILIDLYEPLKSENEKCPTLSEILEVCTAMQVSKEDGFPQKLCEECVKALQFAYAFRMQVLNSYEEFRKIIEAQANVKNEEIDVELKTENQFDYDFCYDDFLLDDFTKHETEDKTYECSTCNKQYTNEKRFINHLKTHGEPNLPCPVCTKTFHKQSTLNRHLVKHYKCNICLNYFETEKLLLEHMTEHVDVEIKTEQEDLYKCSECDVAYTKQRSLAMHMKKHKGKGKKEKSFFCDVCGKEFGLKTLLRRHMKLHSEERPYQCLKCNKSYSRHDQYTEHMNRHNGIKPNVCPHCSKAFSQLCSLKDHIRTHTGETPYLCSECGKGFNNSSNLRQHMMRHTGLKPFACNLCPKRFSTKGQMTCHIGTHTGVHPYKCDECGATFTKPNSLKKHKLIHLGIKPFACDTCSMRFSCKDHLKRHYRIHTGEKPYKCKYCDRAFTQSNDLAKHTRMHVGQNIYQCTQCDMRFRLLSELKQHYPSHYIPRGEPLPLPLPKEASLDVLKPCEENKEGTITIRFSSNGMDKDGLHGNITIDITP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654518;
90% Identity: iTF_00409517;
80% Identity: -