Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419667.1:1763055-1767668[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00012 0.0067 17.3 2.1 1 23 135 157 135 157 0.99

2 13 1e-05 0.00054 20.7 1.1 2 23 163 184 162 184 0.96

3 13 0.014 0.75 10.9 0.6 1 23 185 207 185 207 0.97

4 13 1.4e-05 0.00074 20.3 0.9 1 23 220 242 220 242 0.99

5 13 1e-05 0.00055 20.7 1.1 1 23 252 274 252 274 0.98

6 13 2.3e-05 0.0012 19.6 5.1 1 23 280 302 280 302 0.99

7 13 1.4e-05 0.00076 20.3 3.8 2 23 309 330 309 330 0.98

8 13 8.4e-08 4.5e-06 27.3 0.7 1 23 336 358 336 358 0.96

9 13 0.001 0.057 14.4 1.8 1 23 364 386 364 386 0.96

10 13 3e-06 0.00016 22.4 0.3 1 23 392 414 392 414 0.98

11 13 0.0072 0.39 11.7 6.4 1 23 420 442 420 442 0.97

12 13 1.4e-07 7.4e-06 26.6 1.9 1 23 448 470 448 470 0.99

13 13 0.00053 0.029 15.3 1.1 1 20 476 495 476 498 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00012	0.0067	17.3	2.1	1	23	135	157	135	157	0.99
2	13	1e-05	0.00054	20.7	1.1	2	23	163	184	162	184	0.96
3	13	0.014	0.75	10.9	0.6	1	23	185	207	185	207	0.97
4	13	1.4e-05	0.00074	20.3	0.9	1	23	220	242	220	242	0.99
5	13	1e-05	0.00055	20.7	1.1	1	23	252	274	252	274	0.98
6	13	2.3e-05	0.0012	19.6	5.1	1	23	280	302	280	302	0.99
7	13	1.4e-05	0.00076	20.3	3.8	2	23	309	330	309	330	0.98
8	13	8.4e-08	4.5e-06	27.3	0.7	1	23	336	358	336	358	0.96
9	13	0.001	0.057	14.4	1.8	1	23	364	386	364	386	0.96
10	13	3e-06	0.00016	22.4	0.3	1	23	392	414	392	414	0.98
11	13	0.0072	0.39	11.7	6.4	1	23	420	442	420	442	0.97
12	13	1.4e-07	7.4e-06	26.6	1.9	1	23	448	470	448	470	0.99
13	13	0.00053	0.029	15.3	1.1	1	20	476	495	476	498	0.94

Sequence Information

Coding Sequence: ATGCTCAACGTAGAGAAAACTTGTCGAACGTGCATGAAAACCTGTGAAATATTAATAGACCTCTATGCGCCTTTGAAGCAAACTTTGAAGTCGGAAAATGAGAAATGTCCTACGCTGTCTGAGATTTTGGAAGTCTGTACGGCTACGCAGGTATCTAAAGAGGATGGGTTTCCACAAAAATTATGCGAGGAATGTGTTAAAGCACTTCAATTCACCTACTCCTTTCGAATGCAAGTGCTTAATTCCTATGCAGAGTTCAGGAAAATAATTGAAGCACAAGCAAATGTGAAAAATGAAGAAATTGATGTAGAACTCAAGACCGAAAGCCAATTCGATTATGATTTCTGTTATGACGATTTTCTACTCGACGACTTTCCCAAACATGAGACTGAAGACAAAACTTACGAGTGCAGCATATGCAACAAGCAGTATACTAATGAAAAAAGGTTTATTAACCATTTAAAAACACACGGAGAACCCAATTTGCCTTGTCCTGTGTGTACTAAAACTTTTCATAAGCAATCTGCCCTGAACCGCCACTTAGCAAAACACTACAAGTGTAATATATGCCTTAATTACTTTGAAACGGAAAAGTTACTATTAGACCATATGACAGAGCATGTAGACGTTGAGATTAAGACTGAACAAGTAGATGTGTACAAATGTTCCGAATGTGATGTAGCGTATACTAAACAGAGATCTTTAGCTATGCATATGAAAAAGCATAAAGGCAAGGGGAAAAAGGAGAAAAGTTTCTATTGTGATGTCTGCGGAAAGCAATTTGGGTTGAAGACGTTGCTTCGGAGACACATGAAGTTGCATAGCGAAGAGCGACCATATCAGTGCCTGAAGTGTAACAAAAGTTACTCAAGGCACGACCAGTATACTGAGCATATGAATAGGCATAATGGAATCAAACCTAATGTGTGTCCACATTGTAGTAAAGCATTCAGCCAACTCTGCACCCTTAAAGACCACATCCGCACGCACACCGGTGAAACTCCATACCTCTGCTCCGAGTGTGGCAAGGGCTTCAACAACAGCTCTAATCTGCGGCAACACATGATCAGGCACACCGGGCTTAAACCCTACGCCTGTAACTTGTGCCCAAAGAGATTTTCAACTAAAGGTCAAATGACGTGTCACATCGGCACCCACACCGGGGTCCACCCATACAAGTGCGACGAGTGTGGCGCCGCCTTTACCAAACCCACCTCGCTGAAGAAACACAAGCTGATACACCTGGGCATCAAACCCTTCGCCTGCGATACCTGCAGCATGCGATTCTCGTGCAAAGACCACCTCAAGCGCCACTATCGCATCCACACCGGGGAGAAACCTTACAAGTGCAAGTACTGCGACCGCGCCTTCACGCAGAGCAACGACTTGGCCAAACACACTCGCATGCATGTCGGACAGAACATTTACCAATGCACCCAGTGCGATATGCGCTTCCGTCTCCTCAGCGAGCTGAAACAGCACTACCCCTCACACTACATCCCCAGCGGGGATCCCCCCCTCCCCCCCCCCTAA
Protein Sequence: MLNVEKTCRTCMKTCEILIDLYAPLKQTLKSENEKCPTLSEILEVCTATQVSKEDGFPQKLCEECVKALQFTYSFRMQVLNSYAEFRKIIEAQANVKNEEIDVELKTESQFDYDFCYDDFLLDDFPKHETEDKTYECSICNKQYTNEKRFINHLKTHGEPNLPCPVCTKTFHKQSALNRHLAKHYKCNICLNYFETEKLLLDHMTEHVDVEIKTEQVDVYKCSECDVAYTKQRSLAMHMKKHKGKGKKEKSFYCDVCGKQFGLKTLLRRHMKLHSEERPYQCLKCNKSYSRHDQYTEHMNRHNGIKPNVCPHCSKAFSQLCTLKDHIRTHTGETPYLCSECGKGFNNSSNLRQHMIRHTGLKPYACNLCPKRFSTKGQMTCHIGTHTGVHPYKCDECGAAFTKPTSLKKHKLIHLGIKPFACDTCSMRFSCKDHLKRHYRIHTGEKPYKCKYCDRAFTQSNDLAKHTRMHVGQNIYQCTQCDMRFRLLSELKQHYPSHYIPSGDPPLPPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654518;
90% Identity: iTF_00411701; iTF_00410547;
80% Identity: -