Basic Information

Insect: Cydia pomonella
Gene Symbol: -
Assembly: GCA_033807575.1
Location: CM066370.1:9970420-9979946[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 2.9e-05 0.0024 19.4 7.5 1 23 135 157 135 157 0.99

2 22 0.0028 0.24 13.2 4.4 3 23 199 219 197 219 0.98

3 22 0.0016 0.14 13.9 3.1 3 23 227 247 225 247 0.98

4 22 0.00024 0.02 16.6 3.8 1 23 253 275 253 275 0.98

5 22 0.0004 0.034 15.9 4.1 3 23 283 303 281 303 0.98

6 22 0.0045 0.38 12.5 9.6 1 23 309 331 309 331 0.99

7 22 0.00022 0.018 16.7 5.9 1 23 337 359 337 359 0.98

8 22 4.6e-05 0.0038 18.8 5.6 1 23 365 387 365 387 0.98

9 22 0.0093 0.78 11.6 5.3 1 23 393 415 393 415 0.98

10 22 0.00039 0.033 15.9 4.0 1 23 421 443 421 443 0.98

11 22 0.00024 0.02 16.6 3.8 1 23 449 471 449 471 0.98

12 22 0.0004 0.034 15.9 4.1 3 23 479 499 477 499 0.98

13 22 0.0045 0.38 12.5 9.6 1 23 505 527 505 527 0.99

14 22 0.00022 0.018 16.7 5.9 1 23 533 555 533 555 0.98

15 22 4.6e-05 0.0038 18.8 5.6 1 23 561 583 561 583 0.98

16 22 0.0093 0.78 11.6 5.3 1 23 589 611 589 611 0.98

17 22 2.3e-05 0.0019 19.8 6.5 1 23 617 639 617 639 0.98

18 22 0.0012 0.1 14.3 4.6 1 23 645 667 645 667 0.99

19 22 0.00023 0.019 16.6 3.6 1 22 673 694 673 694 0.96

20 22 0.085 7.1 8.5 8.5 1 23 701 723 701 723 0.98

21 22 0.018 1.5 10.7 4.1 3 23 731 751 729 751 0.98

22 22 0.00011 0.0089 17.7 7.6 1 23 757 779 757 779 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	2.9e-05	0.0024	19.4	7.5	1	23	135	157	135	157	0.99
2	22	0.0028	0.24	13.2	4.4	3	23	199	219	197	219	0.98
3	22	0.0016	0.14	13.9	3.1	3	23	227	247	225	247	0.98
4	22	0.00024	0.02	16.6	3.8	1	23	253	275	253	275	0.98
5	22	0.0004	0.034	15.9	4.1	3	23	283	303	281	303	0.98
6	22	0.0045	0.38	12.5	9.6	1	23	309	331	309	331	0.99
7	22	0.00022	0.018	16.7	5.9	1	23	337	359	337	359	0.98
8	22	4.6e-05	0.0038	18.8	5.6	1	23	365	387	365	387	0.98
9	22	0.0093	0.78	11.6	5.3	1	23	393	415	393	415	0.98
10	22	0.00039	0.033	15.9	4.0	1	23	421	443	421	443	0.98
11	22	0.00024	0.02	16.6	3.8	1	23	449	471	449	471	0.98
12	22	0.0004	0.034	15.9	4.1	3	23	479	499	477	499	0.98
13	22	0.0045	0.38	12.5	9.6	1	23	505	527	505	527	0.99
14	22	0.00022	0.018	16.7	5.9	1	23	533	555	533	555	0.98
15	22	4.6e-05	0.0038	18.8	5.6	1	23	561	583	561	583	0.98
16	22	0.0093	0.78	11.6	5.3	1	23	589	611	589	611	0.98
17	22	2.3e-05	0.0019	19.8	6.5	1	23	617	639	617	639	0.98
18	22	0.0012	0.1	14.3	4.6	1	23	645	667	645	667	0.99
19	22	0.00023	0.019	16.6	3.6	1	22	673	694	673	694	0.96
20	22	0.085	7.1	8.5	8.5	1	23	701	723	701	723	0.98
21	22	0.018	1.5	10.7	4.1	3	23	731	751	729	751	0.98
22	22	0.00011	0.0089	17.7	7.6	1	23	757	779	757	779	0.98

Sequence Information

Coding Sequence: ATGACTGCTTTACTCGATGTCTCTGATAACATCTTGGATGCTCAAGACAAAGGTGTCGCGGACGGCGGGTTTGTTACGGGAGCGGGTTTTTTCGCTCGGGATTGCTCTGTGCAACTCGAGCGCCTCTCGACCCACGCTACTCGAGGCCACCAGCCTAGAGGGACCGCCGGCTGCGAGACCACCACTCCACCCCATACAGACTCTGATATTGAACAGCAAATATTTGTTAGACCTGAGAAAGAACAGACATCACCCGCTTTTGCCTCCTCTGCGGTGTCGGGTGGGCCTGGCTCGTGCGCGGTCAGGCTGGAGCGCCTGCTGccggacgcggcgcggcgcagctgCCGGGTCGGGCGCCGCACGTACAAGCTGCGCGCCGCcgagcccgccgccgccgccagctATCAGTGCCACCATTGCGGCAGACGGTTCACGAACAAGTCGGTTTTAAAGATACACGTACACACTCACTCGCCTTTACATCATTCAACCGTACGCGATTATGGTTTAGAACGACATCACACGCTACACGGCGacaaaaaacagtataaaaaggCTCACGTGATTATACAGATAGGTGAAAAGCCTTTCGGGTGTAATCACTGTGGCTACAAGAGTAGttcgaaattaaatttacatGCTCACCTGAAGACTCACACTGACGAGAAGCCCTTTTGGTGTAGCCACTGTGGctacaagtttaaaaaaaaatcaattttaagtGCTCACCTGAAGACTCACACTGACGAGAAGCCTTTCAGTTGTAGCCACTGTGGCCACAAGAGTAAAAGAAAAGGAGATTTACAGATACACCTGATAACTCACACAAACGCGAAGCCTTTCTGGTGTAGCCACTGTGGCTACAAGTGTAAAACAAAAGGAGATTTACGGAAACACCTGATTATTCACACAGACGAGAAGCCTTTCAGATGTAGCCATTGTAGCCACGAGTGTAAAAGAAAAAATGAGTTGCGGAGACACCTGATGACTCACACAGACGAGAAGCCTTTCACTTGTAGCCACTGTGGCTTCAAGTGTAGAACAAAGGGAAATTTACAGACTCACCTGGTAACTCACACAGATGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGAAAAGAAGATTTACAGAAACACCTGATAATTCACACAGACGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGCAAAGCAATTTTACAGAAACACCTGATAAGTCACACAGACGAGAAGCCTTTCATGTGTAGCCACTGTGGctacaagtttaaaaaaaaatcaattttaagtGCTCACCTGAAGACTCACACTGACGAGAAGCCTTTCAGTTGTAGCCACTGTGGCCACAAGAGTAAAAGAAAAGGAGATTTACAGATACACCTGATAACTCACACAAACGCGAAGCCTTTCTGGTGTAGCCACTGTGGCTACAAGTGTAAAACAAAAGGAGATTTACGGAAACACCTGATTATTCACACAGACGAGAAGCCTTTCAGATGTAGCCATTGTAGCCACGAGTGTAAAAGAAAAAATGAGTTGCGGAGACACCTGATGACTCACACAGACGAGAAGCCTTTCACTTGTAGCCACTGTGGCTTCAAGTGTAGAACAAAGGGAAATTTACAGACTCACCTGGTAACTCACACAGATGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGAAAAGAAGATTTACAGAAACACCTGATAATTCACACAGACGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGCAAAGCAATTTTACAGAAACACCTGATAAGTCACACAGACGAGAAGCCTTTCATGTGTAGCCACTGTGGCTACAAGTGTAAAAGAAAATCAGATTTACAGAAACACCTGATAACTCACACAGACGAAAAGCCTTTCAGGTGTAGCCACTGTAACTACAAgtttaaaaagaaagaaattttACGTGCTCATTTGATGACTCACACAGACGAAAAGCCTTTCAGTTGTAGCCACTGTGGCTACAAGTGTAGAAGAAAAGCAGATTTACGGATTCACCTGAAGACTTACACAGACGACAAGCCTTTCAGGTGTAGCCACTGTCACTACGGGTGCTACAAAAAAGGGGACTTGAGGAATCACGAGATGAAACACACTAGGGAGAAACCTTTCGGCTGTAATAACTGTGACTACAAGAGCCATAGCAAAACATATCTACGACGTCATCAAAAGATACACACGGGGGAAAAGCCCTTCCAGTGTAGTTATTGCGAATACACGTGCAGGAGAAAAGATCATTTAAGGTCTCACCAAAAGATACACACTCGGATataa
Protein Sequence: MTALLDVSDNILDAQDKGVADGGFVTGAGFFARDCSVQLERLSTHATRGHQPRGTAGCETTTPPHTDSDIEQQIFVRPEKEQTSPAFASSAVSGGPGSCAVRLERLLPDAARRSCRVGRRTYKLRAAEPAAAASYQCHHCGRRFTNKSVLKIHVHTHSPLHHSTVRDYGLERHHTLHGDKKQYKKAHVIIQIGEKPFGCNHCGYKSSSKLNLHAHLKTHTDEKPFWCSHCGYKFKKKSILSAHLKTHTDEKPFSCSHCGHKSKRKGDLQIHLITHTNAKPFWCSHCGYKCKTKGDLRKHLIIHTDEKPFRCSHCSHECKRKNELRRHLMTHTDEKPFTCSHCGFKCRTKGNLQTHLVTHTDEKPFRCSHCGYKCKRKEDLQKHLIIHTDEKPFRCSHCGYKCKSKAILQKHLISHTDEKPFMCSHCGYKFKKKSILSAHLKTHTDEKPFSCSHCGHKSKRKGDLQIHLITHTNAKPFWCSHCGYKCKTKGDLRKHLIIHTDEKPFRCSHCSHECKRKNELRRHLMTHTDEKPFTCSHCGFKCRTKGNLQTHLVTHTDEKPFRCSHCGYKCKRKEDLQKHLIIHTDEKPFRCSHCGYKCKSKAILQKHLISHTDEKPFMCSHCGYKCKRKSDLQKHLITHTDEKPFRCSHCNYKFKKKEILRAHLMTHTDEKPFSCSHCGYKCRRKADLRIHLKTYTDDKPFRCSHCHYGCYKKGDLRNHEMKHTREKPFGCNNCDYKSHSKTYLRRHQKIHTGEKPFQCSYCEYTCRRKDHLRSHQKIHTRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411693;
90% Identity: iTF_00411693;
80% Identity: -