Basic Information

Insect: Cydia pomonella
Gene Symbol: -
Assembly: GCA_033807575.1
Location: CM066370.1:9977808-9979946[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 22 2.6e-05 0.0022 19.6 7.5 1 23 65 87 65 87 0.99

2 22 0.0026 0.21 13.3 4.4 3 23 129 149 127 149 0.98

3 22 0.0015 0.12 14.1 3.1 3 23 157 177 155 177 0.98

4 22 0.00022 0.018 16.7 3.8 1 23 183 205 183 205 0.98

5 22 0.00036 0.03 16.0 4.1 3 23 213 233 211 233 0.98

6 22 0.0041 0.34 12.7 9.6 1 23 239 261 239 261 0.99

7 22 0.00019 0.016 16.9 5.9 1 23 267 289 267 289 0.98

8 22 4.1e-05 0.0034 19.0 5.6 1 23 295 317 295 317 0.98

9 22 0.0084 0.7 11.7 5.3 1 23 323 345 323 345 0.98

10 22 0.00035 0.029 16.0 4.0 1 23 351 373 351 373 0.98

11 22 0.00022 0.018 16.7 3.8 1 23 379 401 379 401 0.98

12 22 0.00036 0.03 16.0 4.1 3 23 409 429 407 429 0.98

13 22 0.0041 0.34 12.7 9.6 1 23 435 457 435 457 0.99

14 22 0.00019 0.016 16.9 5.9 1 23 463 485 463 485 0.98

15 22 4.1e-05 0.0034 19.0 5.6 1 23 491 513 491 513 0.98

16 22 0.0084 0.7 11.7 5.3 1 23 519 541 519 541 0.98

17 22 2.1e-05 0.0017 19.9 6.5 1 23 547 569 547 569 0.98

18 22 0.0011 0.092 14.5 4.6 1 23 575 597 575 597 0.99

19 22 0.0002 0.017 16.8 3.6 1 22 603 624 603 624 0.96

20 22 0.076 6.4 8.7 8.5 1 23 631 653 631 653 0.98

21 22 0.016 1.3 10.8 4.1 3 23 661 681 659 681 0.98

22 22 9.6e-05 0.008 17.8 7.6 1 23 687 709 687 709 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	22	2.6e-05	0.0022	19.6	7.5	1	23	65	87	65	87	0.99
2	22	0.0026	0.21	13.3	4.4	3	23	129	149	127	149	0.98
3	22	0.0015	0.12	14.1	3.1	3	23	157	177	155	177	0.98
4	22	0.00022	0.018	16.7	3.8	1	23	183	205	183	205	0.98
5	22	0.00036	0.03	16.0	4.1	3	23	213	233	211	233	0.98
6	22	0.0041	0.34	12.7	9.6	1	23	239	261	239	261	0.99
7	22	0.00019	0.016	16.9	5.9	1	23	267	289	267	289	0.98
8	22	4.1e-05	0.0034	19.0	5.6	1	23	295	317	295	317	0.98
9	22	0.0084	0.7	11.7	5.3	1	23	323	345	323	345	0.98
10	22	0.00035	0.029	16.0	4.0	1	23	351	373	351	373	0.98
11	22	0.00022	0.018	16.7	3.8	1	23	379	401	379	401	0.98
12	22	0.00036	0.03	16.0	4.1	3	23	409	429	407	429	0.98
13	22	0.0041	0.34	12.7	9.6	1	23	435	457	435	457	0.99
14	22	0.00019	0.016	16.9	5.9	1	23	463	485	463	485	0.98
15	22	4.1e-05	0.0034	19.0	5.6	1	23	491	513	491	513	0.98
16	22	0.0084	0.7	11.7	5.3	1	23	519	541	519	541	0.98
17	22	2.1e-05	0.0017	19.9	6.5	1	23	547	569	547	569	0.98
18	22	0.0011	0.092	14.5	4.6	1	23	575	597	575	597	0.99
19	22	0.0002	0.017	16.8	3.6	1	22	603	624	603	624	0.96
20	22	0.076	6.4	8.7	8.5	1	23	631	653	631	653	0.98
21	22	0.016	1.3	10.8	4.1	3	23	661	681	659	681	0.98
22	22	9.6e-05	0.008	17.8	7.6	1	23	687	709	687	709	0.98

Sequence Information

Coding Sequence: ATGGCAAGGCTACACAAATTACTATCATGGAACTTTGCAGCACCCGCTTTTGCCTCCTCTGCGGTGTCGGGTGGGCCTGGCTCGTGCGCGGTCAGGCTGGAGCGCCTGCTGccggacgcggcgcggcgcagctgCCGGGTCGGGCGCCGCACGTACAAGCTGCGCGCCGCcgagcccgccgccgccgccagctATCAGTGCCACCATTGCGGCAGACGGTTCACGAACAAGTCGGTTTTAAAGATACACGTACACACTCACTCGCCTTTACATCATTCAACCGTACGCGATTATGGTTTAGAACGACATCACACGCTACACGGCGacaaaaaacagtataaaaaggCTCACGTGATTATACAGATAGGTGAAAAGCCTTTCGGGTGTAATCACTGTGGCTACAAGAGTAGttcgaaattaaatttacatGCTCACCTGAAGACTCACACTGACGAGAAGCCCTTTTGGTGTAGCCACTGTGGctacaagtttaaaaaaaaatcaattttaagtGCTCACCTGAAGACTCACACTGACGAGAAGCCTTTCAGTTGTAGCCACTGTGGCCACAAGAGTAAAAGAAAAGGAGATTTACAGATACACCTGATAACTCACACAAACGCGAAGCCTTTCTGGTGTAGCCACTGTGGCTACAAGTGTAAAACAAAAGGAGATTTACGGAAACACCTGATTATTCACACAGACGAGAAGCCTTTCAGATGTAGCCATTGTAGCCACGAGTGTAAAAGAAAAAATGAGTTGCGGAGACACCTGATGACTCACACAGACGAGAAGCCTTTCACTTGTAGCCACTGTGGCTTCAAGTGTAGAACAAAGGGAAATTTACAGACTCACCTGGTAACTCACACAGATGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGAAAAGAAGATTTACAGAAACACCTGATAATTCACACAGACGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGCAAAGCAATTTTACAGAAACACCTGATAAGTCACACAGACGAGAAGCCTTTCATGTGTAGCCACTGTGGctacaagtttaaaaaaaaatcaattttaagtGCTCACCTGAAGACTCACACTGACGAGAAGCCTTTCAGTTGTAGCCACTGTGGCCACAAGAGTAAAAGAAAAGGAGATTTACAGATACACCTGATAACTCACACAAACGCGAAGCCTTTCTGGTGTAGCCACTGTGGCTACAAGTGTAAAACAAAAGGAGATTTACGGAAACACCTGATTATTCACACAGACGAGAAGCCTTTCAGATGTAGCCATTGTAGCCACGAGTGTAAAAGAAAAAATGAGTTGCGGAGACACCTGATGACTCACACAGACGAGAAGCCTTTCACTTGTAGCCACTGTGGCTTCAAGTGTAGAACAAAGGGAAATTTACAGACTCACCTGGTAACTCACACAGATGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGAAAAGAAGATTTACAGAAACACCTGATAATTCACACAGACGAGAAGCCTTTCAGGTGTAGCCACTGTGGCTACAAGTGTAAAAGCAAAGCAATTTTACAGAAACACCTGATAAGTCACACAGACGAGAAGCCTTTCATGTGTAGCCACTGTGGCTACAAGTGTAAAAGAAAATCAGATTTACAGAAACACCTGATAACTCACACAGACGAAAAGCCTTTCAGGTGTAGCCACTGTAACTACAAgtttaaaaagaaagaaattttACGTGCTCATTTGATGACTCACACAGACGAAAAGCCTTTCAGTTGTAGCCACTGTGGCTACAAGTGTAGAAGAAAAGCAGATTTACGGATTCACCTGAAGACTTACACAGACGACAAGCCTTTCAGGTGTAGCCACTGTCACTACGGGTGCTACAAAAAAGGGGACTTGAGGAATCACGAGATGAAACACACTAGGGAGAAACCTTTCGGCTGTAATAACTGTGACTACAAGAGCCATAGCAAAACATATCTACGACGTCATCAAAAGATACACACGGGGGAAAAGCCCTTCCAGTGTAGTTATTGCGAATACACGTGCAGGAGAAAAGATCATTTAAGGTCTCACCAAAAGATACACACTCGGATataa
Protein Sequence: MARLHKLLSWNFAAPAFASSAVSGGPGSCAVRLERLLPDAARRSCRVGRRTYKLRAAEPAAAASYQCHHCGRRFTNKSVLKIHVHTHSPLHHSTVRDYGLERHHTLHGDKKQYKKAHVIIQIGEKPFGCNHCGYKSSSKLNLHAHLKTHTDEKPFWCSHCGYKFKKKSILSAHLKTHTDEKPFSCSHCGHKSKRKGDLQIHLITHTNAKPFWCSHCGYKCKTKGDLRKHLIIHTDEKPFRCSHCSHECKRKNELRRHLMTHTDEKPFTCSHCGFKCRTKGNLQTHLVTHTDEKPFRCSHCGYKCKRKEDLQKHLIIHTDEKPFRCSHCGYKCKSKAILQKHLISHTDEKPFMCSHCGYKFKKKSILSAHLKTHTDEKPFSCSHCGHKSKRKGDLQIHLITHTNAKPFWCSHCGYKCKTKGDLRKHLIIHTDEKPFRCSHCSHECKRKNELRRHLMTHTDEKPFTCSHCGFKCRTKGNLQTHLVTHTDEKPFRCSHCGYKCKRKEDLQKHLIIHTDEKPFRCSHCGYKCKSKAILQKHLISHTDEKPFMCSHCGYKCKRKSDLQKHLITHTDEKPFRCSHCNYKFKKKEILRAHLMTHTDEKPFSCSHCGYKCRRKADLRIHLKTYTDDKPFRCSHCHYGCYKKGDLRNHEMKHTREKPFGCNNCDYKSHSKTYLRRHQKIHTGEKPFQCSYCEYTCRRKDHLRSHQKIHTRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00411694;
90% Identity: iTF_00411694;
80% Identity: -