Basic Information

Insect: Cydia pomonella
Gene Symbol: -
Assembly: GCA_033807575.1
Location: CM066368.1:10245598-10251982[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 28 0.00039 0.033 15.9 0.6 1 22 72 93 72 93 0.97

2 28 4.5 3.8e+02 3.1 0.1 3 23 122 142 121 142 0.94

3 28 0.013 1.1 11.1 0.3 2 23 165 186 164 186 0.96

4 28 0.0042 0.35 12.6 0.1 1 23 190 212 190 212 0.96

5 28 0.11 8.9 8.2 0.4 1 15 217 231 217 240 0.78

6 28 0.029 2.4 10.0 1.2 1 23 246 269 246 269 0.94

7 28 0.00077 0.064 15.0 1.2 1 23 276 299 276 299 0.97

8 28 7.4e-05 0.0061 18.2 1.6 1 23 306 328 306 328 0.97

9 28 3.7e-06 0.00031 22.3 3.0 1 23 334 356 334 356 0.98

10 28 0.00019 0.016 16.9 0.2 3 23 361 382 361 382 0.97

11 28 1.7 1.4e+02 4.4 0.2 1 14 465 478 465 482 0.83

12 28 0.057 4.7 9.1 0.6 1 23 521 543 521 543 0.95

13 28 0.0083 0.69 11.7 6.6 1 23 611 633 611 633 0.98

14 28 0.0066 0.55 12.0 0.3 3 23 639 659 638 659 0.95

15 28 0.027 2.2 10.1 0.4 1 23 667 690 667 690 0.95

16 28 0.22 19 7.2 0.4 1 23 696 719 696 719 0.95

17 28 0.16 13 7.7 3.3 1 23 725 748 725 748 0.96

18 28 0.00052 0.044 15.5 0.2 1 23 754 776 754 776 0.96

19 28 6.6e-06 0.00055 21.5 1.9 1 23 782 804 782 804 0.99

20 28 0.0011 0.089 14.5 4.8 1 23 810 832 810 833 0.96

21 28 0.014 1.2 11.0 3.1 1 23 1004 1026 1004 1026 0.96

22 28 9.6e-05 0.008 17.8 1.5 1 23 1030 1052 1030 1052 0.98

23 28 0.0027 0.22 13.3 0.2 1 23 1057 1080 1057 1080 0.95

24 28 0.0016 0.14 13.9 2.7 1 23 1086 1109 1086 1109 0.98

25 28 0.027 2.3 10.1 1.6 1 23 1116 1139 1116 1139 0.95

26 28 0.0015 0.13 14.0 0.9 1 23 1145 1167 1145 1167 0.95

27 28 1.2e-05 0.001 20.6 0.5 1 23 1173 1195 1173 1195 0.99

28 28 1e-05 0.00086 20.9 3.0 1 23 1201 1223 1201 1224 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	28	0.00039	0.033	15.9	0.6	1	22	72	93	72	93	0.97
2	28	4.5	3.8e+02	3.1	0.1	3	23	122	142	121	142	0.94
3	28	0.013	1.1	11.1	0.3	2	23	165	186	164	186	0.96
4	28	0.0042	0.35	12.6	0.1	1	23	190	212	190	212	0.96
5	28	0.11	8.9	8.2	0.4	1	15	217	231	217	240	0.78
6	28	0.029	2.4	10.0	1.2	1	23	246	269	246	269	0.94
7	28	0.00077	0.064	15.0	1.2	1	23	276	299	276	299	0.97
8	28	7.4e-05	0.0061	18.2	1.6	1	23	306	328	306	328	0.97
9	28	3.7e-06	0.00031	22.3	3.0	1	23	334	356	334	356	0.98
10	28	0.00019	0.016	16.9	0.2	3	23	361	382	361	382	0.97
11	28	1.7	1.4e+02	4.4	0.2	1	14	465	478	465	482	0.83
12	28	0.057	4.7	9.1	0.6	1	23	521	543	521	543	0.95
13	28	0.0083	0.69	11.7	6.6	1	23	611	633	611	633	0.98
14	28	0.0066	0.55	12.0	0.3	3	23	639	659	638	659	0.95
15	28	0.027	2.2	10.1	0.4	1	23	667	690	667	690	0.95
16	28	0.22	19	7.2	0.4	1	23	696	719	696	719	0.95
17	28	0.16	13	7.7	3.3	1	23	725	748	725	748	0.96
18	28	0.00052	0.044	15.5	0.2	1	23	754	776	754	776	0.96
19	28	6.6e-06	0.00055	21.5	1.9	1	23	782	804	782	804	0.99
20	28	0.0011	0.089	14.5	4.8	1	23	810	832	810	833	0.96
21	28	0.014	1.2	11.0	3.1	1	23	1004	1026	1004	1026	0.96
22	28	9.6e-05	0.008	17.8	1.5	1	23	1030	1052	1030	1052	0.98
23	28	0.0027	0.22	13.3	0.2	1	23	1057	1080	1057	1080	0.95
24	28	0.0016	0.14	13.9	2.7	1	23	1086	1109	1086	1109	0.98
25	28	0.027	2.3	10.1	1.6	1	23	1116	1139	1116	1139	0.95
26	28	0.0015	0.13	14.0	0.9	1	23	1145	1167	1145	1167	0.95
27	28	1.2e-05	0.001	20.6	0.5	1	23	1173	1195	1173	1195	0.99
28	28	1e-05	0.00086	20.9	3.0	1	23	1201	1223	1201	1224	0.96

Sequence Information

Coding Sequence: ATGttgaaacaaaacataaaaggaCACAGCCAAACCGAACACGAAACTGTGATAAAGGTAGAGCCTAGCGTCATACCAATAGAAAATTTGCTCAGGGAGAAACCGAGATACCAGCGCAGCGCTCGGGCAGAGGCTAGATATGCCACGAAGAAAAATGCCACCGCCATACTTGAGTGCTGGTCCGTCAGCCCCTTCCGATGGAAGCGCAACCAGTTCAAATGCGCCTACTGCGAAGCCAGCTTCACAGACTGTGCTCTCCTCCGGCTTCACATACGCACTTGCTCACCCCAACACAGTGTTAAAGACATCTACAGCAAGTTCAAAGAAATGTCCCTCATCAATATAGACGTAACGCAAGCCGCGTGCCGCCTTTGCTCACTCCCGTACAGTGACGTCAAACAGATGCGCGAACACGTCATCGAGCACGGGTACGATTACGAAATCAATCAGCCCGACGGCGTTCTCCCTTTCTTCCTCAACAAAGAATCTTGGAGCTGCGTTATTTGTCAGGAAACTTTCAACAACTTCCTAAAACTATACGAGCACATGAATATACATTACCAACATTACATTTGTCCAACTTGCGGAAAGGGATATATGACTGCGCCAAGATTAAGGAAGCATTCAGAGGTTCACATCTCTGGAACGTTTCCTTGCAACGAGTGCCCTAAGGTATTCCGAATGCGCGCCGCTAGAGATTATCACAAAGCACACGCTCACGCCAAAGCGCCTAGATACGAATGCCCTCATTGTAACATGCGGTTTGACGGTTACTATGACAGGATGAACCATCTCAACGCAACTCACAGTGAAAAAGAAGTGTCATATCGTTGTCCACACTGCGAGCTAACCTTTAAGACTTCAGGCAAGCGAGCCATCCACGTTCGATCAGTTCACTTCCCGCCGCAGCGTGATTTTAGATGTACAAGCTGCGAATGGAGCTTCAAAACTGCCTACGAACTGAGAAGACACACAGTAAAACATTCAGGAGAGAGGAATTTTCACTGCAACGTCTGTGATAAATCGTTTCCAAGGAATAGGGCATTGAGGACGCATCTGAAAACTCATGATGATTTAGGCTGCAAGTGGTGTGGAGCGATGTTCAAGCAGCGGATGCAATTGTTGGCTCACATGAGGGAAGTGCACTCTGATATGTGTGAACTTGTTAACTTAGGTTCCGCTAATGCGGACGCGGAGGCAAAAGTAGGAGTTAGACGTGTTAGGAAATTAAAGGAGAACGTAAGCGCGCGTCAGATGCGCCGGCGTCGCCGCGCCAACAACGAGTTGCCGGAGGAATCCGAGAAACGCATTTCAAAAACTATGATGCGCAGGAACGCTATGACGCTCCTAGAATGCTCCACCGCTTGGGCTTTCCGCTGGTTCCACAGCGCCTTTTACTGCTCCTACTGTGACGCTAAATTCATAGATACTGCCCCTTTGCggtCCACCGACCTCAAACTTAAATGGAAACCGAAACGCAAGTATAACGATCACAGAGACAATGCGGCTATTATAATAGAGTGTTCCAACGTGTGCCCGTTCAGGTGGAAGCGCGGGACATTCACGTGCGCCTTCTGTCCCATGTCCTTCGGGGACTTCAGCGACGTTCGACACCACGCGCTCGAGCACCCTAACCGGGTCGAGGCCATGCGATTAGCGCGACCCTTAGACAACGTCAAAGTAGAGATCACTGGTCTTCGCTGCGAACTCTGCTTACTACAAATTAAAGACGTTGAAACATTAAAAGAACACTTTCTCCAAATCCATGATAAACCTATCAGCCAAAATCATGGCATCGGCGTTACTCCTTTCCTCATAGAAGGAAAAGAGTTCGTATGCACACATTGTGGAGAACACTTCGAGCtgttttcaaaattaaacaCACACATGAATCATCACTATCCGAACAACATATGCTTCCAATGCGGCAAAGCATTCTCCGCCGCCCATAGGCTTAAAGCTCATTTAGTTATACATGAGGCCTCAAACAGTATGCAATATAAATGTTCCAAATGTGACGACGTTTTCGTGACCCGTGCTTTGAAGAATAGCCACATGGCTTTAACACACGGCCCCGAATATCGATATCGCTGTCCATATTGTAATGACTCGTTCTTAAGATACGCCGACAGGGCAAAGCATCTCAAGGTTGCTCATGATAGGAAAGTTGAGTATCCTTGCCATCTATGCACAGCCGTTTTCTCCATGTGCAATCAGAGAACTAAGCATATACAACAAGTACACATTAGACATAAGCAGTTCTTCTGTGCCTTGTGCCCGTATCAGTTCGTCACGGCAGCCCAACTTAGGAATCACATGGTCAAACATGTAGGGGAAAGAAAATACCAATGTCAGGTGTGTAAGAAGTCCTACGCTAGAACCAAAACGTTGAAGGAACACATGCGTATACATAATAATGATAAACGATTTGTTTGTGAGTTTTGTAACAACGCATACGTGCAGAAGTGTAGCCTTCAGAGCCATATGAGAACGCACCATCCTAACGCTGAACCTCTAAAGAAACTCAGATTGCCTATGCgACGGAAAGGTGAAGACGTTCAGTACAAACCAGAATCTGCTGTTGAGGTCAAACAAGAATTGGCCGAGGCAGAGGATATTGACGCTGCGTCCGCAGCCGGCAAACGGGAGGAGGGCGAACGGAGACGAACCAACTTTAGAAATAACATCTCCACTATCATAGACACGACCACCGCATACCCCTTCAAATACAGAAGGGGAATGTACCTCTGTTACTACTGCAAACACACATTCCTAGAACCAGAGAAACTACGGCAACACAACCATATCTATCATTCCGAATCGAAAGTACTCCCGAAACCCAGAAAATATGAACCTGTGAAAATGGATTTCTCAACCGCGCTGTGCAAGCTATGCATAACTGAAATTCGCGACTATGCCATGTTGAAAGCACATCTGATCGAACACGGCAAAGAGATAGACAATACTTTTGGAGACAGCGTGCTTCCGTACAAGTTAAGCAAAGATGAGCACGTTTGCCAAGTATGTGGAAAGACTTACGAGATGTTCCTAAGCTTACATAAACATATGAATGATCATTACGACCATTATATTTGCGAGAAATGTGGGAAAAGGTTCGCGACTTCGCAACGCATGCTCAATCACACTCGCACTCACGAAACCGGCGTGTTTCCGTGCAAGCAATGCGATGAGACCTTCTCTTCATATGCTCCTTTATACACTCACGTTGCTAAAGTCCATAGATTTAATAAGAGATATAAATGCCCTATCTGTAACGAAAAATTCGTGTCTTACAAGCAGAGGCTGAAGCATTTGCATACGGTACATGAGCAGAAAACGCCTGTTTTCCCTTGCCCCTCTTGCGACAGAGTTTTCGATTTATGCAGTAAGAGAACAGCACATATTAGGTTCCAGCATTTGCAGGAGAGGAATCATGTCTGCAGTGTTTGCGGGATGAAGTTTTTCAGCAATTATGAGCTTCAAGAACATGCAGTCAAGCATGGCGGGGAAAGGATATACCAGTGCGATGTCTGTAAGAAGGCATACGCTAGAATAAAGACCCTTAGGGAACATATGCGGATACATAACAACGACAGACGCTACACGTGTCCCGTATGTGGGCAGAGTTTCATTCAGAATTGTAGCATGAAGCAGCATATTAGGGTGCATCATCCCACACATTTGAAAGATGTATTTTAA
Protein Sequence: MLKQNIKGHSQTEHETVIKVEPSVIPIENLLREKPRYQRSARAEARYATKKNATAILECWSVSPFRWKRNQFKCAYCEASFTDCALLRLHIRTCSPQHSVKDIYSKFKEMSLINIDVTQAACRLCSLPYSDVKQMREHVIEHGYDYEINQPDGVLPFFLNKESWSCVICQETFNNFLKLYEHMNIHYQHYICPTCGKGYMTAPRLRKHSEVHISGTFPCNECPKVFRMRAARDYHKAHAHAKAPRYECPHCNMRFDGYYDRMNHLNATHSEKEVSYRCPHCELTFKTSGKRAIHVRSVHFPPQRDFRCTSCEWSFKTAYELRRHTVKHSGERNFHCNVCDKSFPRNRALRTHLKTHDDLGCKWCGAMFKQRMQLLAHMREVHSDMCELVNLGSANADAEAKVGVRRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNAMTLLECSTAWAFRWFHSAFYCSYCDAKFIDTAPLRSTDLKLKWKPKRKYNDHRDNAAIIIECSNVCPFRWKRGTFTCAFCPMSFGDFSDVRHHALEHPNRVEAMRLARPLDNVKVEITGLRCELCLLQIKDVETLKEHFLQIHDKPISQNHGIGVTPFLIEGKEFVCTHCGEHFELFSKLNTHMNHHYPNNICFQCGKAFSAAHRLKAHLVIHEASNSMQYKCSKCDDVFVTRALKNSHMALTHGPEYRYRCPYCNDSFLRYADRAKHLKVAHDRKVEYPCHLCTAVFSMCNQRTKHIQQVHIRHKQFFCALCPYQFVTAAQLRNHMVKHVGERKYQCQVCKKSYARTKTLKEHMRIHNNDKRFVCEFCNNAYVQKCSLQSHMRTHHPNAEPLKKLRLPMRRKGEDVQYKPESAVEVKQELAEAEDIDAASAAGKREEGERRRTNFRNNISTIIDTTTAYPFKYRRGMYLCYYCKHTFLEPEKLRQHNHIYHSESKVLPKPRKYEPVKMDFSTALCKLCITEIRDYAMLKAHLIEHGKEIDNTFGDSVLPYKLSKDEHVCQVCGKTYEMFLSLHKHMNDHYDHYICEKCGKRFATSQRMLNHTRTHETGVFPCKQCDETFSSYAPLYTHVAKVHRFNKRYKCPICNEKFVSYKQRLKHLHTVHEQKTPVFPCPSCDRVFDLCSKRTAHIRFQHLQERNHVCSVCGMKFFSNYELQEHAVKHGGERIYQCDVCKKAYARIKTLREHMRIHNNDRRYTCPVCGQSFIQNCSMKQHIRVHHPTHLKDVF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00773072;
90% Identity: iTF_00773072;
80% Identity: -