Cpom030116.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- Lztr1
- Assembly
- GCA_033807575.1
- Location
- CM066363.1:5388231-5395026[+]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5.5e-09 2.5e-06 28.9 0.0 50 109 58 128 50 129 0.91 2 9 2.4 1.1e+03 1.1 0.0 78 108 129 159 126 161 0.87 3 9 1.9e-08 8.8e-06 27.1 0.0 10 50 224 261 221 275 0.81 4 9 9.9e-06 0.0045 18.4 0.2 23 50 277 302 261 315 0.75 5 9 9.8e-06 0.0045 18.4 0.2 23 50 318 343 303 357 0.75 6 9 1.1e-05 0.0049 18.3 0.1 24 50 360 384 347 400 0.77 7 9 1.1e-05 0.005 18.3 0.1 24 50 401 425 387 439 0.77 8 9 2.1e-13 9.7e-11 43.1 0.1 23 96 441 515 427 530 0.80 9 9 2.5 1.2e+03 1.0 0.0 77 106 530 559 519 562 0.79
Sequence Information
- Coding Sequence
- ATGTTGAGAGCTGTTTTTCGGATCTCTCTTTTTCTCTGTTTCTCTAATCGGACCACCATCTgcagtggcgccaactggtggGTTGCTCACAGGGAAGCGCGCGAAGAACTAGCCCGACGTATAGACGAGGGCCTCGAAAAGCCCCTAGAAGTATATGACTACAAGGCGAAGCCCCGTCTCACTCTAAAATTACCAGAAGCCACTCCAGAAGCGTTCGACATGGTGCTTAACTTCATATACACGGACCGGATCGATCCGAGCGAGAAGTATGAGGACCCCGAAAAGCCCTCCACCATCCTCCAAGTAATGGAAGTCCTCCGCCTAGCGCTACGCCTGAACATTCCTCGCCTTCGCGGGCTCTGCGCTCGCTTCCTAAAGGCCAACCTTTGCTACAGCAACGTGTTACCAGCTCTCCACTCCGCACACCACGCTCAGTTGCATTCTGTTAAGGAGTACTGTCTCAGATTTTTAGTAAAGGATTACAACTTTACGCAAATAGTGATGTCGCCAGAATTCGAAACAATGGAAAAGAGTCTGATGGTGGAAATGATCCGTCGTCGGCACCGACCACAGGCCAAACCACCAGCGCCGCAGGAAAGCGACGAAGATATTATAGGAACAACGCTCGAGCAAGACATGTGCGTGTTcgtgggcggcgcgggcgcggggctGAGCGACGTGCGGCTGCGCGTGGGCGCCGCGTGGCGGCCCGCGCACCGCTCCATCctggccgcgcgcgccgcctacTTCGAGGCCATGTTCCGCTCCTTCTGCCCCAGCGACAACACCGTCAACGTGAGTGTACACACAGACACGGCGTGTTCGTGGCGGCCCGCGCACCGCTCCATCctggccgcgcgcgccgcctacTTCGAGGCCATGTTCCGCTCCTTCTGCCCCAGCGACAACACCGTCAACGTGAGTGTACACACAGACACGGCGTGTTCGTGGCGGCCCGCGCACCGCTCCATCctggccgcgcgcgccgcctacTTCGAGGCCATGTTCCGCTCCTTCTGCCCCAGCGACAACACCGTCAACGTGAGTGTACACACAGACACGGCGTGTTCGTGGCGGCCCGCGCACCGCTCCATCctggccgcgcgcgccgcctacTTCGAGGCCATGTTCCGCTCCTTCTGCCCCAGCGACAACACCGTCAACGTGAGTGTACACACAGACACGGCGTGTTCGTGGCGGCCCGCGCACCGCTCCATCctggccgcgcgcgccgcctacTTCGAGGCCATGTTCCGCTCCTTCTGCCCCAGCGACAACACCGTCAACGTGAGTGTACACACAGACACGGCGTGTTCGTGGCGGCCCGCGCACCGCTCCATCctggccgcgcgcgccgcctacTTCGAGGCCATGTTCCGCTCCTTCTGCCCCAGCGACAACACCGTCAACATTCAAATATGCGACACGGTGCCCTCAGAGGAAGCGTTCGACTCGCTGCTGCGCTACATTTACTACGGAGACACCAACATGCCTACTGAAGACTCGCTCTACTTGTTCCAAGCACCGATTTATTACGGGTTTACTAACAACCGTCTCCAAGTATTCTGCAAGCACAATCTACAGAGCAACGTCACCCCGGACAACGTATTAGCGATATTACAAGCGGCGGACCGAATGCGCGCCGCCGACATCAAGGAATACGCGCTCAAGATGATCGTGCACAACTTCTACCAGcTGGCCCACCAGGAGTCCATCAAGAGCCTCCCGCAGCCGCTGCTGGTGGACATCGTGGTGGCGCTGGCGTCGGCGCGGCGCGCGGactcgccgctgccgccgcgcgcgctgccCGCCTCCGCCTCCGCCGACACGCTGCCCGACGACGAGCACCGGCGCAGGGACCACCCCGGCTACTGGTAG
- Protein Sequence
- MLRAVFRISLFLCFSNRTTICSGANWWVAHREAREELARRIDEGLEKPLEVYDYKAKPRLTLKLPEATPEAFDMVLNFIYTDRIDPSEKYEDPEKPSTILQVMEVLRLALRLNIPRLRGLCARFLKANLCYSNVLPALHSAHHAQLHSVKEYCLRFLVKDYNFTQIVMSPEFETMEKSLMVEMIRRRHRPQAKPPAPQESDEDIIGTTLEQDMCVFVGGAGAGLSDVRLRVGAAWRPAHRSILAARAAYFEAMFRSFCPSDNTVNVSVHTDTACSWRPAHRSILAARAAYFEAMFRSFCPSDNTVNVSVHTDTACSWRPAHRSILAARAAYFEAMFRSFCPSDNTVNVSVHTDTACSWRPAHRSILAARAAYFEAMFRSFCPSDNTVNVSVHTDTACSWRPAHRSILAARAAYFEAMFRSFCPSDNTVNVSVHTDTACSWRPAHRSILAARAAYFEAMFRSFCPSDNTVNIQICDTVPSEEAFDSLLRYIYYGDTNMPTEDSLYLFQAPIYYGFTNNRLQVFCKHNLQSNVTPDNVLAILQAADRMRAADIKEYALKMIVHNFYQLAHQESIKSLPQPLLVDIVVALASARRADSPLPPRALPASASADTLPDDEHRRRDHPGYW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -