Cpom020309.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- -
- Assembly
- GCA_033807575.1
- Location
- CM066355.1:16788785-16799621[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-11 5.6e-08 33.6 0.0 4 39 174 210 171 214 0.89 2 4 2.2e-12 1.7e-09 38.5 0.1 1 39 225 263 225 266 0.94 3 4 2.7e-14 2.1e-11 44.6 0.0 2 45 281 325 280 325 0.96 4 4 4.5e-18 3.5e-15 56.7 0.0 1 43 332 375 332 377 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGCCGCGGTTTTCCGCAGGTCAAGCACGAACCGGCCTCCGAAGACGACGACTCGCAGTACGCACACGGCTATTTCACCAATCACAATCAGGTACTACCGTCGCTGGAGTTCCATCCGGTGAAGCTCGAGGCCGATATAGACGAGAATGCGTCTGCGCACATATTGCGGCACTTACAGGGTTCGGAGAGTCTGGAGGAGCTAgcgccgccggcgccggcggGCCCTGCCGCCACGCCGGTCGCCGTTAAACAGGAGCCCGCCGAGCCCGCCGTCGTGCTGGAGACCCTCGCACCAGCGCCGCACTCGGATACGCTGGGTTCCATGCTCATCGACAGACACAAAACGCTGCCTGGCGCCAACGATGCTGACTCCATGGATTTCATGCCTCTCCTTGCTGTTAAAGACGAACCTCTCTCTGAAGGAgAGCAACACCACTTGAGTGGGTCAGACACGAGTGACTCCAGCACCCAGCCGGAGCCGCCTCGTGGCAGCCCCAAAAACTGGACGCAGCAAGACATGGAACTGGCCCTTGAGGCCCTGCGGACGCACAATATGAGTCTTACTAAGGCGTCAGCCACATACGGCATCCCGTCGACAACGCTCTGGCAGCGCGCGCACCGACTCGGGATCGACACGCCCAAAAAAGAAGGCGCGTCCAAGTCATGGAGTGAAGAGGATCTTCGCGGCGCTCTTCACGCGTTGCGGTCCGGAGCTATttctgccaacaaggccagcaAGGCTTACGGCATTCCAAGCAGCACTCTGTACAAGATTGCTCGGCGCGAGGGCATTCGGCTGGCGGCGCCATTCAACGCGGCGCCCACCGCGTGGCGCCGAGCTGACTTGGAGCGGGCGCTGGCGTCCATCCGCTGTGGAGCGGCGTCGGTACAGCGAGCGGCTTCGCAGTTTGGCATACCTACAGGCACGCTGTACGGGCGATGCAAACGAGAGGGAATCGAGCTGTCACGGTCTAACCCTACGCCCTGGTCCGAAGACGCAATGGGAGAGGCGTTGGAAGCTGTTAGGGTGGGACAAATGTCAATAAACCAAGCAGCGATCCACTATAATCTGCCTTATTCGTCACTCTACGGACGATTCAAGAGGTGCAAATATCAAAGTCCTCAAGCAATACCCCAGCAGAACATGCCAGAGATGGAGATGGAACCCCAACAAGCCCAAATGTACTATCCACACCAAGTGCCCATGCCCGAGGAGTATCACCATAGCTACATGGCGGAACCTGAAGCTATGCATGCCCCTGTCATTCAGGAACCCTATGGAATGTACTATCAAGCCAACACCGTTGCAAACGCAATTGGATGTCAGGAAATGTTTGGATCAGTCAAAACTGACAGATCTTCTCCCGGAATTCTACAGTAA
- Protein Sequence
- MPGRGFPQVKHEPASEDDDSQYAHGYFTNHNQVLPSLEFHPVKLEADIDENASAHILRHLQGSESLEELAPPAPAGPAATPVAVKQEPAEPAVVLETLAPAPHSDTLGSMLIDRHKTLPGANDADSMDFMPLLAVKDEPLSEGEQHHLSGSDTSDSSTQPEPPRGSPKNWTQQDMELALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLRGALHALRSGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLERALASIRCGAASVQRAASQFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQSPQAIPQQNMPEMEMEPQQAQMYYPHQVPMPEEYHHSYMAEPEAMHAPVIQEPYGMYYQANTVANAIGCQEMFGSVKTDRSSPGILQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00680441;
- 90% Identity
- iTF_00659381;
- 80% Identity
- -