Cpom014413.1
Basic Information
- Insect
- Cydia pomonella
- Gene Symbol
- Rel
- Assembly
- GCA_033807575.1
- Location
- CM066351.1:11037917-11073843[-]
Transcription Factor Domain
- TF Family
- RHD
- Domain
- RHD domain
- PFAM
- PF00554
- TF Group
- Beta-Scaffold Factors
- Description
- Proteins containing the Rel homology domain (RHD) are eukaryotic transcription factors. The RHD is composed of two structural domains. This is the N-terminal DNA-binding domain that is similar to that found in P53. The C-terminal domain has an immunoglobulin-like fold (See PF16179) that functions as a dimerisation domain [1-2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.2e-29 1.1e-25 91.9 0.1 1 168 58 227 58 228 0.87 2 3 3.6 3.2e+04 -4.0 0.1 99 117 259 277 258 283 0.82 3 3 0.72 6.3e+03 -1.8 0.1 26 50 484 508 475 548 0.78
Sequence Information
- Coding Sequence
- ATGTCAACAAGTGAGCATGATACTATGAGTGAAACGGCGTCTTCGCCGGTGTCGTACACGGGGTCCCCGCATCGGTCGCCGTGCCAACAGGTGCCGCAGTTGGCTAATGTATTCACAGAACTTACGTGTGCCGAATTCAATGGCTACAATGAGATgaaagACAGGCCGTTCCTGCGCATAGTGGAGCAGCCGCAGGACCACTTCCGGTTCCGGTACAGGAGTGAGATGGTGGGCACACACGGCTGCCTGCTCGGAAAAACCAGCCTCACCAGTAAAGTCAAGACGCATCCTACGGTTGAGTTGGTGAACTGGAACATGCGAGCACTGATCCGCTGCAGGCTCGCGCAGCACCTCAAGTCGGACGAGCATCCGCATCAGCTGCTCGAGGACGAGCAAGAAGACAGAGATGTTAGCGCGGAGGTGCCGGAGCGCGGTAGTTACCGGGTCGGTTTCGCTGGCATGAGCATCATACACACGGCTAAGAAAGATGTCCCTGCTCTTCTGTTCAAGAAATATAAGGATAAGAAAGGAAAACCTATCGACAACAGAGAACTCATGAGCTTTTGCGAGACGGAGGCTCGAGGTATCAACCTGAACATCGTGAGGCTGAGGTTTAGCGCCCACGACATCGACACCGACCGCGAGATCTGCTCTCCGGTGTTCTCCGAGCCTATACATAACATGAAAAGCGCAGCAACTAATGACCTCAAAATATGCCGCATAAGCAAATTCTACGGCCGTCCCAAAGGCGGCGAGGACGTTTACATTCTAGTAGAGAAAGTTAATAAGAAGAACATTGAGATCCGCTTCGTGGAGAGGAATGAAAATAATGCCATAACATGGTGGGCTAAAGCACACTTTCTTCAGAGCGACGTCCACCACCAATACGCTATCGTGTTCAGGACACCAGCGTACAAGAACCAGGAGATAACCGATGACGTGAAAGTGTCAGTGGAGCTAGTGAGGCCCTCTGACGGCCGCTGCAGCGACCCTAAGGAGTTCACGTATAAAGCAGACCCGTTCACAAAGCATAACAAGAAGAGGAAAGCTAACATGCAGTCGCCGTTTAGCTCCTTTAGCAGTTCCGGCTCTTTAGGATCAATAAAAAGTTTTGGTCTACCGGCCACCGTTATGGAATTAAATGTTCCCGTAATGATGGAAACCCAAACCAACGCCGATTTAGGCGACGCACTAATGGGGATGGCGTGTGATCAAGAACTAAGCCCCAATCCTTTGCAACTGCACTACACTGTCAGTCCTATGATGCCGCAGGCGGACCCGCCTACGATTAGCTTAAGTTCTACGGAGTTTGCAAACCTTCTGCGAGCGGATTTAGAACCAGATCAGAGGGATGATTTTACAGCACTTTGCCAGCAGTACATGACTCCATCAATGACTGAGTTCATGCAAGACAGGTTGGAACCGGATTCAGGACGCGGAAAGcCTATACTCCAAGGGAAAACGCAAGTACAGCAACAGGGCACCCGCCCGCAAGTGAAGACCCACAACACAACGGACAAGCCGAGTGAATACACCGCCGTCTACACGCCCGAACACGGATCGGAGGTTAAGAAATTGGTAAAGGAGATCTGTGATCATATACGGAACAAGGCTGCTTTCAAGAAGCAAGTGGTGAAAGAAAAACTAGAGAGACTGTTTGCGATGCGCCTTTCCAACGGAGACACGTTCCTTCACATGAGCCTATACAACAATAGAGTCAGTTTTGAATACATAGTAAAATTACTGCACTCTATGAAAATGCACCATCTTATCAATCTCGCTAATGATCTCGAGCAGACGATTCTACACTTGGCCATCGTCTACGACCTTCCCCAGTTGGTGACTGTCATCATAGCCAACGGTGGCGACCCAATGCTATGCGACCAAGACGGCAACAACGCAGTTCACTACGCCACGCAATGCGGCGTCTGCATGCAGCCGTTACTCGACGCCATCAAGAAGAACAAAGTGCCGTGCGACCTCAACGCCGTCAACAAAGAGAAGCAAACGGCCCTCCACTTAGCCGCAGTCCCAGGAACCGAGCCCTCCGACATCGAAGCAGCAAAGCATTCCATAAGGTTACTCCTACAACACGGGGCCAGCCACAACGCACGCGACGCGGAGGGCCGCACGCCGCTGCACCTCGTCGCCTACGACGACCGCTTGGCTCTCGCTAGGGTGCTCTTGGACCACATGCCCGAGAGTGACATCGATGCTGTGGACAGCCGCGGCTACACGGCCCTCCAAATCGTGTGCGGCGGGGAAATCAGAGAAAACACAATCGAATTTATGAAATTACTCATTGACAAAAAGgCGGATCCTCACGCATACGAGCCACATACGGAGTCTGCATGGACTTTAGCACGCGACAAACTGGAGCTGCGCGCCGCGCTGGTGGCACTTCTCGACTGCGACACCGACGTCAAGTCCGAGCCGGAGGATGAGTACGAGTCGGCCGATGAGGGGGAGGAGTCATGCCTGAGCGACCTATTTCTATACAGCAGTGAGCTAGCCGCGGAGCTCGACCAGTCGGGCGCGTGGCGCGCGCTGGCCGCGCGGCTGCGGCACGACGCGCTCGCCAACTGGTACGAGAACACGCCCAGCCCCACCCGCACCCTGCTGGCGCAGCTCAAGGAATGCCAGGACAGCACCATAACGTCGAAGTCTCTGATGCTGATACTCGAAGACCTAGGCCTGACGGAGGCGGCGCAAATTATTCGCAACAGAACCGGCACTCTCGACTAG
- Protein Sequence
- MSTSEHDTMSETASSPVSYTGSPHRSPCQQVPQLANVFTELTCAEFNGYNEMKDRPFLRIVEQPQDHFRFRYRSEMVGTHGCLLGKTSLTSKVKTHPTVELVNWNMRALIRCRLAQHLKSDEHPHQLLEDEQEDRDVSAEVPERGSYRVGFAGMSIIHTAKKDVPALLFKKYKDKKGKPIDNRELMSFCETEARGINLNIVRLRFSAHDIDTDREICSPVFSEPIHNMKSAATNDLKICRISKFYGRPKGGEDVYILVEKVNKKNIEIRFVERNENNAITWWAKAHFLQSDVHHQYAIVFRTPAYKNQEITDDVKVSVELVRPSDGRCSDPKEFTYKADPFTKHNKKRKANMQSPFSSFSSSGSLGSIKSFGLPATVMELNVPVMMETQTNADLGDALMGMACDQELSPNPLQLHYTVSPMMPQADPPTISLSSTEFANLLRADLEPDQRDDFTALCQQYMTPSMTEFMQDRLEPDSGRGKPILQGKTQVQQQGTRPQVKTHNTTDKPSEYTAVYTPEHGSEVKKLVKEICDHIRNKAAFKKQVVKEKLERLFAMRLSNGDTFLHMSLYNNRVSFEYIVKLLHSMKMHHLINLANDLEQTILHLAIVYDLPQLVTVIIANGGDPMLCDQDGNNAVHYATQCGVCMQPLLDAIKKNKVPCDLNAVNKEKQTALHLAAVPGTEPSDIEAAKHSIRLLLQHGASHNARDAEGRTPLHLVAYDDRLALARVLLDHMPESDIDAVDSRGYTALQIVCGGEIRENTIEFMKLLIDKKADPHAYEPHTESAWTLARDKLELRAALVALLDCDTDVKSEPEDEYESADEGEESCLSDLFLYSSELAAELDQSGAWRALAARLRHDALANWYENTPSPTRTLLAQLKECQDSTITSKSLMLILEDLGLTEAAQIIRNRTGTLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -