Basic Information

Insect: Cydia fagiglandana
Gene Symbol: -
Assembly: GCA_963556715.1
Location: OY750807.1:3676408-3689101[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00051 0.033 15.7 4.2 1 23 364 386 364 386 0.98

2 11 0.22 14 7.4 0.5 2 23 394 416 394 416 0.92

3 11 0.5 32 6.3 1.3 1 23 420 442 420 442 0.93

4 11 0.0051 0.33 12.5 0.0 3 23 478 499 477 499 0.96

5 11 0.15 9.4 7.9 0.6 1 22 513 534 513 538 0.93

6 11 0.0033 0.21 13.1 0.1 2 23 557 579 556 579 0.95

7 11 0.27 17 7.1 2.0 2 23 598 620 597 620 0.96

8 11 0.0013 0.082 14.4 0.3 2 23 634 655 634 655 0.96

9 11 0.022 1.4 10.5 0.0 2 23 661 682 660 682 0.92

10 11 2.2e-05 0.0014 20.0 2.4 1 23 688 710 688 710 0.98

11 11 1e-05 0.00065 21.0 1.3 1 23 716 739 716 739 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00051	0.033	15.7	4.2	1	23	364	386	364	386	0.98
2	11	0.22	14	7.4	0.5	2	23	394	416	394	416	0.92
3	11	0.5	32	6.3	1.3	1	23	420	442	420	442	0.93
4	11	0.0051	0.33	12.5	0.0	3	23	478	499	477	499	0.96
5	11	0.15	9.4	7.9	0.6	1	22	513	534	513	538	0.93
6	11	0.0033	0.21	13.1	0.1	2	23	557	579	556	579	0.95
7	11	0.27	17	7.1	2.0	2	23	598	620	597	620	0.96
8	11	0.0013	0.082	14.4	0.3	2	23	634	655	634	655	0.96
9	11	0.022	1.4	10.5	0.0	2	23	661	682	660	682	0.92
10	11	2.2e-05	0.0014	20.0	2.4	1	23	688	710	688	710	0.98
11	11	1e-05	0.00065	21.0	1.3	1	23	716	739	716	739	0.98

Sequence Information

Coding Sequence: ATGGTAGCTTACTGTTGTGTTAAAGGTTGTAGTAATAACAGCAGCAACAAGAAAAAAGACCCCAATGATGTGACATCGTTTCACGcCTTCCCATCGAATACAGGACTCAAACAAAAGTGGCTGAAAGCCATTGGGAGGCCAGACTGGGCTCCACCGGCCTATGCCCGCATTTGCAGCGGACACTTCAGCTATGAGCAGATAAACCATGATGGACGGAGGATACGGATAAAGGATGATGCAGTGCCTGTAAAAGATTTACCTGCCAACTCCAACTTTGAGGCGTCAGAAGTGGAAGTCTGCAGGTTTTGTCTGGCCACTGAGGTGCGCCTGCACAGCCTTCAGGATGGAGTGCACCGGTTATACTTGGAGTCCTTAGTAGGGTATAATGTAAACTACAATATAGAAGGCCTTCCACAATTTATTTGCTATGAGTGCGCAGCTCACCTGAAGAAATGCTACAATTTATTGGAAAAGAGCCTGACTGTACAAGCTACTTTACTTGATATTTTTGCACAATATGGAAGGaTCACAATAAACCTTATTAACGAAAAGAATCGCAAGGAGCTAAATTTATCATCGTCATTAAGCGTACAAGTAATTAAAACAATTTATGAATTCAAACACAGCAATGATTTAGAAAACCATGAAAGTCACATTGAAAGTAAACTTGTAACAGATGACAATTACTTAAGCATACCTAAATTAGAAGTTACAGATTTGATGATAAATCCTGAAGGTATTAAAGATAGTGAAAATGCTGAAACTCTGAATGAGGATGTCATTGAAGACAGAAACTTGGAAGATGATAGTAGGTCAGATCCTTTGGAGGATGCATTCAGTAATTCTGCTGACTTGGGTTTAGATGACGAAGTTAAATCTGAACCAGAAAACGTAACACCGAATAAAGTACCCAAAGAAGAGACACGACGGGCACGAGTGAAATACACTGTCAAAGCAAGTTTTCTTGCAGGGCTGACGCCAGACGAACGGAAAATGCTGCTGTATTTTGATATTCGTTTTTTGAATTTAGAACAACAAATAGAAGAATGGAGCAAATCAAAAGAGAACAAGGAATTTAGTGGAGAATCGTTTCAATGTAACATATGCTCGAAAGTGTTTGCATATCACAATAGCTATAAACAGCACACACAGAGCCATGACCccAGCCGAGGGAGCGCCGAGTGCCCCGTATGCAAGGTCCGTTTCAAGAACGAGGTGTTAGCGCGCTCGCACGCTCATCGCGCTCATGCTAAGAAGTTCTACTGCAAATTATGTTCGAAGGCGTACAACAATGTCGGCGTAGCGAAGAAGCATCACTTGTGGCACTCGGGCTACACATACAAATGTAGCCATTCACAATGTTCGTTCTCCACCTTGCACGCGGCCGCGCTGGGCGCGCACCGGCGCGCGCGCCACCCCGCCGCGCCCGCCTGCGCGCGCTGCGGCCGCGCCTTCGCCAGCGCACAAGGGCTGCGGCTGCATGCGAACACCGTCCATCGAGATAGAGTGGATCCTGAGTCGGTAAATAATCCAAAATATAGATGTCATCAATGCGAACTCGACTTCGAGTCGGAAGGGGCGCAGCGAGTCCATATACTAACGTCCAAGCAACACAAGAAGAAAACTAGTCTATGTGACACAACACCGCAACAACAGAGCCTCAAAACCACTTGCAATAAATGCGGCATAGAGTATCCGACGCTCAAGGCGCTAATAGAGCACAGAAGAGCGGAACACAGAAGGACCAAGAAGAAAACCAGCTGGAGTCTGCCTGGAGACTCTTACCCGACGAAGTGTGATCATtgCGAGACTGTTGTGTCCAATCGTGGCGAACATTGGCGTCATGTGCGCATAACGCACCCGGCGCTGCGCGCCACATACCGGCCCGTAGTGACTGCTGTCTGCGATACTTGCGGGAAAGGCTTCcagAACTCTACAAAACTGGCGCTACACGTGCTCCGCCACGGCGCGCCGTCCGTGCCATGCCCGCGCTGTCCGCGAGTATTGTACGACAAGCACGCGCTGGCGCGCCACGCCGCGGCGCACGCGCCGACGCGGCCGCACCGCTGCAAGCGCTGCCCGAGGGCCTTTAAACAGAAAGCGAACCTTGATAGGCACGAGAGGGTGCACACTGGAGTAACTCCATACGAGTGCTCCATGTGCGGCAAGAAGTTCAAGTATTCGACCAGCATGAACTTGCACGTCCGGACCGTGCACTACAAGTTGCCGCATCcgccgaggaagaagaagaataaagagagtgaTATTCATTATCAGAAATAA
Protein Sequence: MVAYCCVKGCSNNSSNKKKDPNDVTSFHAFPSNTGLKQKWLKAIGRPDWAPPAYARICSGHFSYEQINHDGRRIRIKDDAVPVKDLPANSNFEASEVEVCRFCLATEVRLHSLQDGVHRLYLESLVGYNVNYNIEGLPQFICYECAAHLKKCYNLLEKSLTVQATLLDIFAQYGRITINLINEKNRKELNLSSSLSVQVIKTIYEFKHSNDLENHESHIESKLVTDDNYLSIPKLEVTDLMINPEGIKDSENAETLNEDVIEDRNLEDDSRSDPLEDAFSNSADLGLDDEVKSEPENVTPNKVPKEETRRARVKYTVKASFLAGLTPDERKMLLYFDIRFLNLEQQIEEWSKSKENKEFSGESFQCNICSKVFAYHNSYKQHTQSHDPSRGSAECPVCKVRFKNEVLARSHAHRAHAKKFYCKLCSKAYNNVGVAKKHHLWHSGYTYKCSHSQCSFSTLHAAALGAHRRARHPAAPACARCGRAFASAQGLRLHANTVHRDRVDPESVNNPKYRCHQCELDFESEGAQRVHILTSKQHKKKTSLCDTTPQQQSLKTTCNKCGIEYPTLKALIEHRRAEHRRTKKKTSWSLPGDSYPTKCDHCETVVSNRGEHWRHVRITHPALRATYRPVVTAVCDTCGKGFQNSTKLALHVLRHGAPSVPCPRCPRVLYDKHALARHAAAHAPTRPHRCKRCPRAFKQKANLDRHERVHTGVTPYECSMCGKKFKYSTSMNLHVRTVHYKLPHPPRKKKNKESDIHYQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00409638;
90% Identity: iTF_00410348;
80% Identity: iTF_00410348;