Basic Information

Insect: Cydia amplana
Gene Symbol: -
Assembly: GCA_948474715.1
Location: OX419668.1:14252734-14270111[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00026 0.014 16.3 5.1 1 23 370 392 370 392 0.98

2 12 0.57 31 5.8 0.1 2 23 400 422 400 422 0.88

3 12 0.032 1.7 9.7 0.9 1 23 426 448 426 448 0.93

4 12 0.017 0.92 10.6 0.6 1 23 453 477 453 477 0.98

5 12 0.017 0.94 10.5 0.5 1 23 481 504 481 504 0.95

6 12 0.13 6.8 7.8 0.2 1 22 518 539 518 543 0.93

7 12 0.00036 0.019 15.8 0.2 2 23 562 584 561 584 0.95

8 12 0.2 11 7.2 1.9 2 23 603 625 602 625 0.96

9 12 0.0012 0.068 14.1 0.5 2 23 639 660 639 660 0.96

10 12 0.37 20 6.3 0.0 2 23 666 687 665 687 0.94

11 12 3.8e-06 0.00021 22.1 0.8 1 23 693 715 693 715 0.98

12 12 8e-06 0.00043 21.0 1.3 1 23 721 744 721 744 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00026	0.014	16.3	5.1	1	23	370	392	370	392	0.98
2	12	0.57	31	5.8	0.1	2	23	400	422	400	422	0.88
3	12	0.032	1.7	9.7	0.9	1	23	426	448	426	448	0.93
4	12	0.017	0.92	10.6	0.6	1	23	453	477	453	477	0.98
5	12	0.017	0.94	10.5	0.5	1	23	481	504	481	504	0.95
6	12	0.13	6.8	7.8	0.2	1	22	518	539	518	543	0.93
7	12	0.00036	0.019	15.8	0.2	2	23	562	584	561	584	0.95
8	12	0.2	11	7.2	1.9	2	23	603	625	602	625	0.96
9	12	0.0012	0.068	14.1	0.5	2	23	639	660	639	660	0.96
10	12	0.37	20	6.3	0.0	2	23	666	687	665	687	0.94
11	12	3.8e-06	0.00021	22.1	0.8	1	23	693	715	693	715	0.98
12	12	8e-06	0.00043	21.0	1.3	1	23	721	744	721	744	0.98

Sequence Information

Coding Sequence: ATGGTAGCCTACTGTTGTGTCAAAGGTTGCAGTAACAACAGCAGCAACAAGAAGAAAGACCCCAATGATGTGACATCGTTTCACGCCTTCCCGTCAAATATAGAACTCAAACAAAAGTGGCTAAAAGCTATTGGGAGGCCAGACTGGGCTCCACCGGCCTATGCCCGCATTTGCAGCGGACACTTCAGCTATGAGCAGATAAACCACGATGGACGGAGGATAAGGATTAAGGATGATGCAGTACCTGTAAAAGATTTACCTGCCAACTCCAACTTTGAGGCGTCAGATGTGGAAGTCTGCAGGTTTTGTCTGGCCACGGAGGTGCGCCTGCACAGCCTTCAGGATGGAGTGCACCGGTTATACTTGGAGTCCTTAGTAGGGTATAATGAAAACTACAATATAGAAGGTCTCCCACAGTTTATTTGCTATGAGTGTGCTGCTCACCTGAAAAAATGCTACAAGTTGCTGGAAAAGAGCCTGACCGTACAAGCTACTTTGCTTGACATTTTTGCACAATACGGAAAGATCACAATAAACCTTATTAAAACAAAGAATCGCAAGGAGCTAAACTTGTCGTCGCCATTAAGCATACAGGAAATTAAAACGATAGATGAATTCAAACAGAGCCATAATTTGGAAAACAATGAAAGTCACACTGGAAATAAACTTGGAACAGATGACAGTTACTTAGAAGTTATAAATTTAATGATAAATCCTGAAGGTGTTAAAGATAGTGAAAATGCTGAAGCTCTGAATGAGGATGTCATTGAAGGCAGAAACTTGAAAGATGATAGTAGATCAGATCCTTTTGATGATGCATTCAGTAATTCTACTGAGTTGAGTTTAGATGATGAAGTTAAATCTGAACCAGAAAAAGAAACATTGGATCAAGTACCCAAAGTTAGCCTTGTAACAGGATGGAAAGAGCAGGTGCCCGAACGAAAGAGAGCACGTGTGAAATACACGGCCAGAGCAACTGTGCTGACAAGGCTGACGCCTGACGAACGCAACATGCTGCAGTATTTTGATATTAGTTTTTTGAAGTTAGAACAACAAATAGAAGAATGGAGCAAATCAAAAGAGAACAAGGAATTTAGTGGAGAATCGTTTAAATGTCACATATGCTCGAAAACGTTTGCATATCAAAATAGCTATAAACTGCATACACAGAGCCATGATCCCAGCCGAGGGAGCGCCGAGTGTCCCGTATGCAAGGTGCGTTTCAAGAGCGAGGTGGTAGCGCGCTCGCACGCCAATCGCGCTCATGCCAAGAAATTCTACTGCAAATTATGTCCGAAGGCCTTCAACAATGTCGGCGTGGCGAAGAAGCATCACTTGTGGCACTCGGGCTACGTGTACAAATGCGAGCGCGCGCACTGCTCGTACTCCACCGCGCATGCGTCGGCGCTGGGCGCGCACGCGCGCGCGCACGCCGGCGCGCACGCGTGCGCGCGCTGCGGCCGCGCCTGCGCCAGCGCGCGGGGGCTGCGGCTGCACGCCAACACTGTCCATCGAGACGTTCAGGGTGCTGAGTCTGAAAACAATCCGAAATACAGATGTGATCAGTGCGAGCTCAACTTCGAGTCGGAAGGGGCGCGTCGAGTGCATATACTCACGTCCAATCAACACAAGAAGAAAACTAATCTATGTGACACAACACCGCAAGAACAGAGCCTAAAAACCACTTGCAATAAGTGCGGTACAGAGTTTCCGACGCTAAAGGCGCTAATAGAGCACAGAAGAGCAGAGCACAGAAGGACCAAGAAGAAAACCAGCTGGAGTCTGCCAGGAGACTCTTATCCGACGAAGTGTGATCATTGCGAGACTGTTGTGTCCAATCGTGCGGAACATTGGCGCCATGTTCGCGTAACGCACCCCGCGCAGCGCGCCACCTACCGGCCCGTAGTGACTGCTGTCTGCGACACTTGCGGGAAAGGCTTCCAGAACTCGACAAAGCTGTCGCTGCACGTGCTCCGTCACGGCGCGCCGTCGGTCCCGTGTCCGCGCTGCCCGCGCGTGCTGTGGGACAAGCACGCGCTGGCGCGCCACGCCGCCTCGCACGCGCCCGCGCGCCCGCACCGCTGCCCGCTGTGTCCGAGGGCCTTTAAACAGAGGGCGAACCTTGATAGACACGAAAGGGTACACACCGGTGTAACTCCATACGAGTGTTCCATGTGCGGCAAGAAGTTCAAATACTCGACCAGCATGAACCTGCACGTGCGGACCGTGCACTACAAGTTGCCGCACCCGCCGAGGAAGTAG
Protein Sequence: MVAYCCVKGCSNNSSNKKKDPNDVTSFHAFPSNIELKQKWLKAIGRPDWAPPAYARICSGHFSYEQINHDGRRIRIKDDAVPVKDLPANSNFEASDVEVCRFCLATEVRLHSLQDGVHRLYLESLVGYNENYNIEGLPQFICYECAAHLKKCYKLLEKSLTVQATLLDIFAQYGKITINLIKTKNRKELNLSSPLSIQEIKTIDEFKQSHNLENNESHTGNKLGTDDSYLEVINLMINPEGVKDSENAEALNEDVIEGRNLKDDSRSDPFDDAFSNSTELSLDDEVKSEPEKETLDQVPKVSLVTGWKEQVPERKRARVKYTARATVLTRLTPDERNMLQYFDISFLKLEQQIEEWSKSKENKEFSGESFKCHICSKTFAYQNSYKLHTQSHDPSRGSAECPVCKVRFKSEVVARSHANRAHAKKFYCKLCPKAFNNVGVAKKHHLWHSGYVYKCERAHCSYSTAHASALGAHARAHAGAHACARCGRACASARGLRLHANTVHRDVQGAESENNPKYRCDQCELNFESEGARRVHILTSNQHKKKTNLCDTTPQEQSLKTTCNKCGTEFPTLKALIEHRRAEHRRTKKKTSWSLPGDSYPTKCDHCETVVSNRAEHWRHVRVTHPAQRATYRPVVTAVCDTCGKGFQNSTKLSLHVLRHGAPSVPCPRCPRVLWDKHALARHAASHAPARPHRCPLCPRAFKQRANLDRHERVHTGVTPYECSMCGKKFKYSTSMNLHVRTVHYKLPHPPRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00409346; iTF_00410348; iTF_00410756; iTF_00412569; iTF_00412852;
90% Identity: iTF_00409346;
80% Identity: iTF_00409346;